CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
golgi 1
mitochondrion 6
peroxisome 1
plastid 2
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion, nucleus, peroxisome, plastid, secretory
BaCelLo:	secretory
MultiLoc:	mitochondrion
Plant-mPloc:	cytosol, mitochondrion, nucleus, peroxisome, plasma membrane, plastid
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	mitochondrion

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH10294
KRH23029
KRH24840
KRH29844

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G04795.1	KRH10294	AT3G46090.1	17259181
AT2G04795.1	KRH23029	AT3G46090.1	17259181
AT2G04795.1	KRH24840	AT3G46090.1	17259181
AT2G04795.1	KRH29844	AT3G46090.1	17259181

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH73490	Soybean	mitochondrion	82.52	79.44
KRH18651	Soybean	mitochondrion	63.11	60.75
VIT_12s0059g02120.t01	Wine grape	mitochondrion	49.51	47.66
Solyc07g006590.1.1	Tomato	cytosol	34.95	40.91
AT2G04795.1	Thale cress	mitochondrion	35.92	38.95
Bra013194.1-P	Field mustard	mitochondrion	33.98	38.46
CDX93064	Canola	mitochondrion	33.98	38.46
AT5G35732.2	Thale cress	mitochondrion	33.98	34.65
Bra035385.1-P	Field mustard	mitochondrion	33.01	34.34
CDY50046	Canola	cytosol	33.01	26.98

Protein Annotations

EMBL:ACUP02008514	EnsemblPlants:KRH14655	EnsemblPlantsGene:GLYMA_14G039800	EntrezGene:100777315	ProteinID:KRH14655	ProteinID:KRH14655.1
UniParc:UPI000295E3EC	UniProt:K7M4U1	MapMan:35.2	:	:	:

Description

hypothetical protein

Coordinates

chr14:-:2972858..2973594

Molecular Weight (calculated)

11328.5 Da

IEP (calculated)

6.768

GRAVY (calculated)

-0.163

Length

103 amino acids

Sequence
(BLAST)

001: MWRLLAAVAR NLQNTRKSSK VADESMFEAG NGVELFGHER GRRQHGWGLV CSILQAPISI LSCVSQPQVN NGSDGVWVTG EFSQVSEMNH LMFGSYICNT
101: LGD

Best Arabidopsis Sequence Match ( AT5G35732.2 )
(BLAST)

001: MTQMLSVLRR NLQNLRKSPR VADDTELPSS TSGAGPGVVA NGRRDGFNSV IMRFPFSIIS CFAVPRVSGT DGLWVSGDYG SISEVNHLMV RNGTCKFKHI
101: E

Arabidopsis Description

unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G04795.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Euk /.../s - 9610 (source: NCBI BLink). [Source:TAIR;Acc:AT5G35732]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.