Factsheet for TraesCS5B01G260700.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G269800.1	Wheat	cytosol	97.78	97.78
TraesCS7B01G366400.1	Wheat	cytosol	53.33	93.51
TraesCS6B01G176400.1	Wheat	cytosol	90.37	90.37
TraesCS1B01G241200.1	Wheat	cytosol	89.63	87.05
HORVU5Hr1G072680.1	Barley	cytosol	96.3	86.09
TraesCS4B01G008400.1	Wheat	cytosol	80.74	84.5
TraesCS7B01G390800.1	Wheat	cytosol	85.19	82.73
TraesCS7B01G390900.1	Wheat	cytosol	85.19	82.73
EER97248	Sorghum	cytosol	81.48	80.88
TraesCS4B01G218100.1	Wheat	cytosol	78.52	80.3
TraesCS2B01G480400.1	Wheat	cytosol	82.96	78.87
TraesCS2B01G480300.1	Wheat	cytosol	82.96	78.87
EER97249	Sorghum	cytosol	80.74	77.31
TraesCS4B01G218000.1	Wheat	cytosol	75.56	77.27
KXG35893	Sorghum	cytosol	78.52	74.65
OQU89356	Sorghum	cytosol	75.56	73.38
TraesCS2B01G480600.1	Wheat	cytosol	72.59	71.01
TraesCS4B01G233100.1	Wheat	cytosol	80.74	70.78
TraesCS2B01G480500.1	Wheat	cytosol	70.37	68.84
TraesCS5B01G187200.1	Wheat	cytosol	71.85	68.31
TraesCS5B01G524600.1	Wheat	cytosol	62.96	62.04
TraesCS5B01G524700.1	Wheat	cytosol	61.48	59.71
TraesCS5B01G524500.1	Wheat	cytosol	43.7	59.0
TraesCS2B01G107800.1	Wheat	cytosol	65.93	58.17
TraesCS2B01G107600.1	Wheat	cytosol	60.0	57.86
TraesCS7B01G366700.1	Wheat	cytosol	60.0	52.94
TraesCS1B01G130900.1	Wheat	cytosol	60.0	52.26
TraesCS1B01G425700.1	Wheat	cytosol	60.0	52.26
TraesCS7B01G366600.1	Wheat	cytosol	60.0	51.92
TraesCS7B01G413800.1	Wheat	cytosol	57.78	50.98
TraesCS5B01G222800.1	Wheat	cytosol	57.78	50.98
TraesCS6B01G176000.1	Wheat	cytosol	57.04	50.33
TraesCS1B01G182700.1	Wheat	cytosol	59.26	49.38
TraesCS6B01G115100.1	Wheat	cytosol	57.78	44.57
TraesCS7B01G366800.1	Wheat	cytosol	60.74	42.93
Os07t0489500-00	Rice	cytosol	80.0	42.52
TraesCS6B01G164700.2	Wheat	cytosol	62.96	37.12
TraesCS6B01G164600.1	Wheat	cytosol	62.96	37.12
TraesCS6B01G148000.2	Wheat	cytosol	62.96	35.71
TraesCS3B01G572400.1	Wheat	cytosol, mitochondrion	35.56	31.58
TraesCS6B01G110300.1	Wheat	cytosol	60.74	30.37
TraesCS7B01G354200.1	Wheat	cytosol	62.96	30.36
TraesCS3B01G043200.1	Wheat	cytosol	31.85	30.28
TraesCS7B01G354100.1	Wheat	cytosol	62.96	27.87
TraesCS7B01G354000.2	Wheat	cytosol	63.7	27.83
TraesCS6B01G293300.1	Wheat	plastid	60.0	26.56
TraesCS6B01G012500.1	Wheat	cytosol	47.41	26.12
TraesCS3B01G567200.1	Wheat	mitochondrion	42.22	25.45
TraesCS7B01G367600.1	Wheat	cytosol	53.33	23.92
TraesCS3B01G567300.1	Wheat	mitochondrion	38.52	23.85
TraesCS3B01G568900.1	Wheat	mitochondrion	24.44	23.57
TraesCS3B01G567800.1	Wheat	mitochondrion	37.04	22.32
TraesCS4B01G389100.1	Wheat	endoplasmic reticulum	33.33	21.33
TraesCS3B01G569000.1	Wheat	mitochondrion	34.81	20.98
TraesCS4B01G387300.1	Wheat	cytosol	45.93	19.25
TraesCS3B01G567400.1	Wheat	cytosol	40.74	18.52
TraesCS3B01G567100.1	Wheat	nucleus	40.74	18.52
TraesCS3B01G061600.1	Wheat	cytosol	33.33	18.15
TraesCS3B01G568000.1	Wheat	cytosol	40.0	18.12
TraesCS3B01G569700.1	Wheat	cytosol	41.48	17.45
TraesCS7B01G004300.1	Wheat	cytosol	25.19	15.6
TraesCS7B01G486200.1	Wheat	cytosol	31.85	14.78
TraesCS1B01G325300.1	Wheat	cytosol	38.52	13.1
TraesCS5B01G386500.1	Wheat	nucleus	32.59	11.4
TraesCS6B01G164900.1	Wheat	cytosol	8.89	7.84
TraesCS6B01G140600.1	Wheat	cytosol	8.89	7.84
TraesCS7B01G367700.1	Wheat	cytosol	8.89	7.84
TraesCS7B01G381800.1	Wheat	cytosol	8.89	7.84
TraesCS5B01G080200.1	Wheat	cytosol	8.89	7.84
TraesCS2B01G426500.1	Wheat	cytosol	8.89	7.84
TraesCS5B01G387000.1	Wheat	cytosol	34.07	6.73
TraesCS7B01G044300.1	Wheat	cytosol	2.96	6.35
TraesCS5B01G386900.1	Wheat	cytosol	0.74	0.25

Protein Annotations

MapMan:17.1.2.1.43	Gene3D:2.20.28.70	Gene3D:3.10.20.90	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0019538	InterPro:IPR000626	InterPro:IPR038587	InterPro:L40e_sf	PFAM:PF00240	PFAM:PF01020
PRINTS:PR00348	ScanProsite:PS00299	PFscan:PS50053	PANTHER:PTHR10666	PANTHER:PTHR10666:SF255	InterPro:Ribosomal_L40e
InterPro:Ribosomal_zn-bd	SMART:SM00213	SMART:SM01377	SUPFAM:SSF54236	SUPFAM:SSF57829	EnsemblPlantsGene:TraesCS5B01G260700
EnsemblPlants:TraesCS5B01G260700.1	InterPro:Ubiquitin	InterPro:Ubiquitin-like_domsf	InterPro:Ubiquitin_CS	InterPro:Ubiquitin_dom	SEG:seg

Description

No Description!

Coordinates

chr5B:+:445173805..445177164

Molecular Weight (calculated)

15382.9 Da

IEP (calculated)

10.640

GRAVY (calculated)

-0.747

Length

135 amino acids

Sequence
(BLAST)

001: MQIFVKTLTG KTITLEVESS DTIDNVKAKI QDKEDIPPDQ QRLIFAGKQL EEGRTLADYN TQKESTLHLV LRLRGGSRGG RPTGVPPNLL QLALKYNEKR
101: MICRKCYARL PARATNCRKK KCGHSNELRP KKKFM

Best Arabidopsis Sequence Match ( AT2G36170.1 )
(BLAST)

001: MQIFVKTLTG KTITLEVESS DTIDNVKAKI QDKEGIPPDQ QRLIFAGKQL EDGRTLADYN IQKESTLHLV LRLRGGIIEP SLMMLARKYN QDKMICRKCY
101: ARLHPRAVNC RKKKCGHSNQ LRPKKKIK

Arabidopsis Description

RPL40BUbiquitin-60S ribosomal protein L40-1 [Source:UniProtKB/Swiss-Prot;Acc:B9DHA6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.