Factsheet for Os07t0489500-00

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G269800.1	Wheat	cytosol	42.91	80.74
TraesCS6D01G137400.1	Wheat	cytosol	42.52	80.0
TraesCS6A01G148100.1	Wheat	cytosol	42.52	80.0
TraesCS5B01G260700.1	Wheat	cytosol	42.52	80.0
TraesCS1B01G241200.1	Wheat	cytosol	43.7	79.86
Os09t0452700-00	Rice	cytosol, extracellular, plasma membrane, plastid	43.7	79.29
EER97248	Sorghum	cytosol	42.13	78.68
HORVU7Hr1G109650.2	Barley	cytosol	43.31	78.57
TraesCS6B01G176400.1	Wheat	cytosol	41.73	78.52
TraesCS7D01G474200.1	Wheat	cytosol	42.91	78.42
TraesCS7B01G390900.1	Wheat	cytosol	42.91	78.42
TraesCS7B01G390800.1	Wheat	cytosol	42.91	78.42
TraesCS7A01G487500.1	Wheat	cytosol	42.91	78.42
TraesCS7D01G474300.1	Wheat	cytosol	42.52	77.7
TraesCS1D01G228700.1	Wheat	cytosol	42.52	77.7
HORVU5Hr1G072680.1	Barley	cytosol	44.49	74.83
EER97249	Sorghum	cytosol	41.34	74.47
OQU89356	Sorghum	cytosol	40.16	73.38
KXG35893	Sorghum	cytosol	40.94	73.24
TraesCS1A01G227100.1	Wheat	cytosol	46.85	70.41
Os05t0160200-01	Rice	nucleus	32.68	53.55
Os01t0328400-01	Rice	nucleus	32.68	53.55
Os09t0420800-01	Rice	cytosol, extracellular, plastid	31.5	52.29
Os06t0650100-01	Rice	cytosol, extracellular, plasma membrane	31.5	52.29
Os06t0673500-01	Rice	cytosol	35.04	42.58
Os10t0491801-00	Rice	cytosol	22.44	38.78
Os04t0628100-01	Rice	plasma membrane	37.01	23.98
Os02t0161900-01	Rice	extracellular, vacuole	38.58	20.25
Os06t0681400-01	Rice	cytosol	38.58	17.63

Protein Annotations

MapMan:17.1.2.1.43	Gene3D:2.20.28.70	Gene3D:3.10.20.90	UniProt:A0A0P0X6U8	ProteinID:BAT01541.1	GO:GO:0003674
GO:GO:0003735	GO:GO:0005198	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0019538	InterPro:IPR000626
InterPro:IPR038587	InterPro:L40e_sf	EnsemblPlantsGene:Os07g0489500	EnsemblPlants:Os07t0489500-00	PFAM:PF00240	PFAM:PF01020
PRINTS:PR00348	ScanProsite:PS00299	PFscan:PS50053	PANTHER:PTHR10666	PANTHER:PTHR10666:SF255	InterPro:Ribosomal_L40e
InterPro:Ribosomal_zn-bd	SMART:SM00213	SMART:SM01377	SUPFAM:SSF54236	SUPFAM:SSF57829	UniParc:UPI000393BABE
InterPro:Ubiquitin	InterPro:Ubiquitin-like_domsf	InterPro:Ubiquitin_CS	InterPro:Ubiquitin_dom	SEG:seg	:

Description

Ubiquitin domain containing protein. (Os07t0489500-00)

Coordinates

chr7:-:18134538..18135622

Molecular Weight (calculated)

28486.1 Da

IEP (calculated)

10.282

GRAVY (calculated)

-0.305

Length

254 amino acids

Sequence
(BLAST)

001: MQHAAMQELQ LQGDPIRSDP TRAGYVWPLI SPMMPCMHSI NPATVPPPPA SSSSCACAAR VLLVSRNPIK TLDHQLISST GRATHLLPHH RYRISQKFVS
101: TTALRDPRLC KMQIFVKTLT GKTITLEVES SDTIDNVKAK IQDKEGIPPD QQRLIFAGKQ LEDGRTLADY NIQKESTLHL VLRLRGGGRP GYPMIEPNLL
201: ALARSKMEKK MICRKCYARL PYKATNCRKK KCGHTNEVII SILVFFMVHF DSGK

Best Arabidopsis Sequence Match ( AT3G52590.1 )
(BLAST)

001: MQIFVKTLTG KTITLEVESS DTIDNVKAKI QDKEGIPPDQ QRLIFAGKQL EDGRTLADYN IQKESTLHLV LRLRGGIIEP SLMMLARKYN QDKMICRKCY
101: ARLHPRAVNC RKKKCGHSNQ LRPKKKIK

Arabidopsis Description

RPL40BUbiquitin-60S ribosomal protein L40-1 [Source:UniProtKB/Swiss-Prot;Acc:B9DHA6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.