Factsheet for Os09t0420800-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid, extracellular, cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

extracellular: 26072143
plastid: 27992503

msms PMID: 26072143 doi

B Du, Z Wei, Z Wang, X Wang, X Peng, B Du, R Chen, L Zhu, G He

State Key Laboratory of Hybrid Rice, College of Life Sciences, Wuhan University, Wuhan, 430072, China., State Key Laboratory of Hybrid Rice, College of Life Sciences, Wuhan University, Wuhan, 430072, China. Electronic address: gche@whu.edu.cn.

msms PMID: 27992503 doi

S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER96746	Sorghum	cytosol	100.0	100.0
TraesCS5B01G222800.1	Wheat	cytosol	100.0	100.0
EER88734	Sorghum	cytosol	99.35	99.35
TraesCS7B01G413800.1	Wheat	cytosol	99.35	99.35
Os06t0650100-01	Rice	cytosol, extracellular, plasma membrane	99.35	99.35
Solyc10g005560.2.1	Tomato	cytosol, nucleus	99.35	98.7
PGSC0003DMT400029234	Potato	cytosol	99.35	98.7
Zm00001d036717_P001	Maize	cytosol	91.5	91.5
Os09t0452700-00	Rice	cytosol, extracellular, plasma membrane, plastid	53.59	58.57
Os06t0673500-01	Rice	cytosol	78.43	57.42
Os05t0160200-01	Rice	nucleus	56.21	55.48
Os01t0328400-01	Rice	nucleus	56.21	55.48
Os10t0491801-00	Rice	cytosol	37.91	39.46
Os07t0489500-00	Rice	cytosol	52.29	31.5
Os04t0628100-01	Rice	plasma membrane	79.08	30.87
Os02t0161900-01	Rice	extracellular, vacuole	81.05	25.62
Os06t0681400-01	Rice	cytosol	81.05	22.3

Protein Annotations

MapMan:19.2.2.3.1	Gene3D:3.10.20.90	EntrezGene:4347085	EMBL:AK099513	ProteinID:BAD33498.1	ProteinID:BAD33626.1
ProteinID:BAF25113.1	ProteinID:BAT08123.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	InterPro:IPR000626	InterPro:Nedd8-like
EnsemblPlantsGene:Os09g0420800	EnsemblPlants:Os09t0420800-01	UniProt:P0C030	PFAM:PF00240	PRINTS:PR00348	ScanProsite:PS00299
PFscan:PS50053	PANTHER:PTHR10666	PANTHER:PTHR10666:SF230	SMART:SM00213	SUPFAM:SSF54236	UniParc:UPI00003FF3B1
InterPro:Ubiquitin	InterPro:Ubiquitin-like_domsf	InterPro:Ubiquitin_CS	InterPro:Ubiquitin_dom	RefSeq:XP_015611997.1	SEG:seg

Description

RUB1Similar to Ubiquitin. (Os09t0420800-01)

Coordinates

chr9:+:15160893..15162859

Molecular Weight (calculated)

17130.7 Da

IEP (calculated)

5.849

GRAVY (calculated)

-0.448

Length

153 amino acids

Sequence
(BLAST)

001: MQIFVKTLTG KTITLEVESS DTIDNVKAKI QDKEGIPPDQ QRLIFAGKQL EDGRTLADYN IQKESTLHLV LRLRGGTMIK VKTLTGKEIE IDIEPTDTID
101: RIKERVEEKE GIPPVQQRLI YAGKQLADDK TAKDYNIEGG SVLHLVLALR GGY

Best Arabidopsis Sequence Match ( AT1G31340.1 )
(BLAST)

001: MQIFVKTLTG KTITLEVESS DTIDNVKAKI QDKEGIPPDQ QRLIFAGKQL EDGRTLADYN IQKESTLHLV LRLRGGTMIK VKTLTGKEIE IDIEPTDTID
101: RIKERVEEKE GIPPVQQRLI YAGKQLADDK TAKDYNIEGG SVLHLVLALR GGFGLL

Arabidopsis Description

RUB1RUB1 [Source:UniProtKB/TrEMBL;Acc:A0A178W1F2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.