Factsheet for PGSC0003DMT400089149

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400057275	Potato	cytosol	34.57	83.16
PGSC0003DMT400029234	Potato	cytosol	27.13	80.52
PGSC0003DMT400027156	Potato	cytosol	66.52	79.79
PGSC0003DMT400037401	Potato	cytosol	66.3	79.11
PGSC0003DMT400000364	Potato	cytosol	19.69	70.31
PGSC0003DMT400013958	Potato	cytosol	19.69	70.31
PGSC0003DMT400031900	Potato	cytosol	19.69	70.31
PGSC0003DMT400047686	Potato	cytosol	19.69	70.31
PGSC0003DMT400015022	Potato	cytosol	20.13	70.23
PGSC0003DMT400011939	Potato	cytosol	21.01	61.54
PGSC0003DMT400013321	Potato	cytosol	20.57	60.26
PGSC0003DMT400011737	Potato	cytosol	20.79	52.49
PGSC0003DMT400033485	Potato	cytosol	14.66	32.37
PGSC0003DMT400010171	Potato	cytosol	33.48	28.65
PGSC0003DMT400037403	Potato	cytosol	33.26	28.52

Protein Annotations

EntrezGene:102599865	MapMan:19.2.2.1.1	Gene3D:3.10.20.90	ProteinID:AAA96951	ProteinID:AAA96951.1	ProteinID:ADO17492
ProteinID:ADO17492.1	ProteinID:CAA77737	ProteinID:CAA77737.1	ProteinID:CAA77738	ProteinID:CAA77738.1	ProteinID:CAA77739
ProteinID:CAA77739.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EMBL:HM439286	InterPro:IPR000626
UniProt:M1DHJ4	PFAM:PF00240	EnsemblPlantsGene:PGSC0003DMG400038720	PGSC:PGSC0003DMG400038720	EnsemblPlants:PGSC0003DMT400089149	PRINTS:PR00348
ScanProsite:PS00299	PFscan:PS50053	PANTHER:PTHR45095	PANTHER:PTHR45095:SF2	SMART:SM00213	SUPFAM:SSF54236
EMBL:U26831	UniParc:UPI00000AC751	InterPro:Ubiquitin	InterPro:Ubiquitin-like_domsf	InterPro:Ubiquitin_CS	InterPro:Ubiquitin_dom
RefSeq:XP_006360086.1	EMBL:Z11671	EMBL:Z11672	EMBL:Z11673	:	:

Description

Polyubiquitin [Source:PGSC_GENE;Acc:PGSC0003DMG400038720]

Coordinates

chr7:+:54308339..54309712

Molecular Weight (calculated)

51208.9 Da

IEP (calculated)

7.882

GRAVY (calculated)

-0.438

Length

457 amino acids

Sequence
(BLAST)

001: MQIFVKTLTG KTITLEVESS DTIDNVKAKI QDKEGIPPDQ QRLIFAGKQL EDGRTLADYN IQKESTLHLV LRLRGGMQIF VKTLTGKTIT LEVESSDTID
101: NVKAKIQDKE GIPPDQQRLI FAGKQLEDGR TLADYNIQKE STLHLVLRLR GGMQIFVKTL TGKTITLEVE SSDTIDNVKA KIQDKEGIPP DQQRLIFAGK
201: QLEDGRTLAD YNIQKESTLH LVLRLRGGMQ IFVKTLTGKT ITLEVESSDT IDNVKAKIQD KEGIPPDQQR LIFAGKQLED GRTLADYNIQ KESTLHLVLR
301: LRGGMQIFVK TLTGKTITLE VESSDTIDNV KAKIQDKEGI PPDQQRLIFA GKQLEDGRTL ADYNIQKEST LHLVLRLRGG MQIFVKTLTG KTITLEVESS
401: DTIDNVKAKI QDKEGIPPDQ QRLIFAGKQL EDGRTLADYN IQKESTLHLV LRLRGGF

Best Arabidopsis Sequence Match ( AT4G05320.2 )
(BLAST)

Arabidopsis Description

UBQ10Polyubiquitin 10 [Source:UniProtKB/Swiss-Prot;Acc:Q8H159]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.