Factsheet for PGSC0003DMT400076791

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 1
plasma membrane 4
golgi 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	peroxisome, plastid, secretory
BaCelLo:	plastid
MultiLoc:	plasma membrane
Plant-mPloc:	golgi
PProwler:	secretory
PTS1:	peroxisome
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g013440.2.1	Tomato	plasma membrane	75.24	91.33
PGSC0003DMT400076795	Potato	plasma membrane	51.19	63.99
VIT_14s0108g00690.t01	Wine grape	plasma membrane	62.62	63.07
VIT_14s0108g00630.t01	Wine grape	plasma membrane	63.33	62.15
VIT_14s0108g00620.t01	Wine grape	plasma membrane	62.14	60.98
PGSC0003DMT400008751	Potato	plasma membrane	60.48	59.62
KRH40095	Soybean	plasma membrane	60.0	59.15
VIT_06s0061g00570.t01	Wine grape	plasma membrane	35.95	58.75
KRH01177	Soybean	plasma membrane	59.76	58.51
VIT_06s0009g01140.t01	Wine grape	plasma membrane	57.62	57.48
KRH40094	Soybean	plasma membrane	58.1	57.14
PGSC0003DMT400019843	Potato	peroxisome, plasma membrane, plastid, vacuole	20.24	56.67
KRH40411	Soybean	plasma membrane	36.19	56.51
AT5G15240.1	Thale cress	plasma membrane	56.43	56.03
CDX86397	Canola	plasma membrane	53.81	55.8
Bra025369.1-P	Field mustard	plasma membrane	53.81	55.8
CDX85233	Canola	plasma membrane	53.81	55.8
AT3G28960.2	Thale cress	plasma membrane	53.57	55.56
KRH30199	Soybean	extracellular, plasma membrane	49.29	55.5
CDX85556	Canola	plasma membrane	56.67	55.48
CDX91000	Canola	plasma membrane	56.43	55.12
CDY44419	Canola	plasma membrane	52.86	54.81
Bra033075.1-P	Field mustard	plasma membrane	52.86	54.81
PGSC0003DMT400082135	Potato	plasma membrane	13.1	53.92
KRG98784	Soybean	plasma membrane	45.48	51.9
KRG98240	Soybean	plasma membrane	53.33	51.26
KRH30194	Soybean	plasma membrane	53.33	51.26
KRH75803	Soybean	mitochondrion	30.48	40.89
CDY04048	Canola	plasma membrane	52.62	38.1
PGSC0003DMT400080507	Potato	peroxisome	40.48	32.5
PGSC0003DMT400028760	Potato	cytosol, peroxisome, plasma membrane	40.24	31.95
PGSC0003DMT400036273	Potato	cytosol, nucleus, plasma membrane	33.1	31.31
PGSC0003DMT400055694	Potato	extracellular, plasma membrane	27.14	30.89
PGSC0003DMT400019190	Potato	cytosol, nucleus, plasma membrane	40.0	27.91
PGSC0003DMT400045065	Potato	plasma membrane, plastid	21.67	21.62
PGSC0003DMT400094217	Potato	plasma membrane	21.43	21.33
PGSC0003DMT400086252	Potato	plasma membrane	21.43	21.18
PGSC0003DMT400048045	Potato	plasma membrane	20.71	20.37
PGSC0003DMT400033422	Potato	plasma membrane	19.52	18.98

Protein Annotations

EnsemblPlants:PGSC0003DMT400076791	EnsemblPlantsGene:PGSC0003DMG400029866	EntrezGene:102593025	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:AA_transpt_TM	PANTHER:PTHR22950	PANTHER:PTHR22950:SF280	PFAM:PF01490	PGSC:PGSC0003DMG400029866	RefSeq:XP_006350162.1
SEG:seg	TMHMM:TMhelix	UniParc:UPI000296F28A	UniProt:M1CXE0	MapMan:24.2.3.4.7	:

Description

Amino acid transporter [Source:PGSC_GENE;Acc:PGSC0003DMG400029866]

Coordinates

chr3:-:26824152..26830361

Molecular Weight (calculated)

46224.7 Da

IEP (calculated)

8.234

GRAVY (calculated)

0.774

Length

420 amino acids

Sequence
(BLAST)

001: MEPKSDDGSS NIRVRLLYND GRIEDNTISG PTSFSRTCFN GLNALSGVGI LSVPYALASG GWLSLIFLFI IAISTYYTSL LIQRCMDIDP TIRNYPDIGE
101: RAFGTMGRML VSTTMNVELY MVVTGFLILE GDNLQNLFGD HIQLQIFGLD GKQCFVIIIS LIILPTVWLN NMSILSYISA TGVLASIVLL ASILWAALFD
201: GIGFQTSQTH FINWKGMPTA ISLYAFCYCA HPVFPTLYTS MINPKKFSKV MFVCFLLCTI SYASMAIVGY LMFGPSVLSQ ITLNLPTNKI SSKVAIYTTL
301: VNPIAKYSLM IKPLENSIEN QLPIHYKARV CSLLIRTALV ISTVIVALAI PFFGYLMSLV GAFLSVTASI VLPCLCFLKF SGIYQRLGFE QVFIVGIVIM
401: GIAIMLVGTY TSVLQIISHL

Best Arabidopsis Sequence Match ( AT5G15240.1 )
(BLAST)

001: MSEDKDYMSE PFIVKKIDDE ESLLDDYNPQ GNTSFSKTCF HGINALSGVG ILSVPYALAS GGWLSLIILF TVAITTFYCA ILIKRCMEMD PLLRSYPDIG
101: YKAFGNTGRV IVSIFMNLEL YLVATSFLIL EGDNLNKLFS NVGLNFMGLE FQGKQMFIIM VALIILPSVW LDNMRILSYV SASGVFASGV ILASIFSVGA
201: FEGVGFKNND SEVFRLNGVA TSVSLYAFCY CAHPVFPTLY TSMKNKRQFS NVMIICFTIC TFIYASVAVL GYLMYGSDVE SQITLNLPTD KLSSKVAIWT
301: TLVNPIAKFA LMVTPIIDAM RSRFSRVLPN KRASGFLLST ILVTSNVIVA LLLPFFGDLM SLVGAFLSAS ASVILPCLCY LKISGKYQRL GFETLVLIGI
401: TLTGIVVVIT GTYQAVKDIF GRF

Arabidopsis Description

AVT1JAmino acid transporter AVT1J [Source:UniProtKB/Swiss-Prot;Acc:Q9LXF8]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.