CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
plasma membrane 3
extracellular 1
endoplasmic reticulum 1
vacuole 2
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	nucleus, plasma membrane, vacuole
BaCelLo:	nucleus
MultiLoc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	vacuole
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX85556	Canola	plasma membrane	96.51	96.74
AT5G15240.1	Thale cress	plasma membrane	84.88	86.29
PGSC0003DMT400076795	Potato	plasma membrane	44.42	56.85
PGSC0003DMT400076791	Potato	plasma membrane	55.12	56.43
CDX85233	Canola	plasma membrane	52.33	55.56
CDX86397	Canola	plasma membrane	52.33	55.56
CDY44419	Canola	plasma membrane	51.16	54.32
Solyc03g013160.2.1	Tomato	plasma membrane	53.02	53.52
PGSC0003DMT400008751	Potato	plasma membrane	52.56	53.05
Solyc03g013440.2.1	Tomato	plasma membrane	41.63	51.73
CDY04048	Canola	plasma membrane	51.16	37.93
CDX73972	Canola	extracellular, plastid	10.47	34.35
CDY35425	Canola	plasma membrane	39.53	32.69
CDY22507	Canola	plasma membrane	39.53	32.69
CDX80808	Canola	plasma membrane	19.07	32.41
CDY18351	Canola	plastid	37.91	32.02
CDX79951	Canola	cytosol, nucleus, plasma membrane	39.07	31.76
CDY23868	Canola	cytosol, nucleus, plasma membrane	38.84	31.57
CDX78269	Canola	plasma membrane	38.84	31.51
CDY07919	Canola	cytosol, nucleus, plasma membrane	38.37	31.25
CDX73443	Canola	cytosol, nucleus, plasma membrane	38.6	30.91
CDY67831	Canola	cytosol, peroxisome, plasma membrane	37.91	30.58
CDY06942	Canola	cytosol, peroxisome, plasma membrane	37.91	30.52
CDY10463	Canola	plasma membrane	38.14	30.04
CDX93284	Canola	cytosol, nucleus, plasma membrane	37.91	29.85
CDY55126	Canola	plasma membrane	35.58	29.77
CDY40336	Canola	plasma membrane	37.67	29.62
CDX73974	Canola	cytosol, nucleus, plasma membrane	28.14	29.58
CDY44630	Canola	plasma membrane	37.67	29.51
CDX74865	Canola	plasma membrane	37.67	29.35
CDY38090	Canola	plasma membrane	27.21	27.02
CDY55127	Canola	cytosol, plasma membrane, plastid	35.58	26.2
CDX80809	Canola	plasma membrane	36.05	26.14
CDY21456	Canola	plasma membrane	21.86	23.33
CDY70145	Canola	plasma membrane	21.4	22.83
CDX85489	Canola	vacuole	22.79	22.69
CDX73848	Canola	plasma membrane	21.63	21.83
CDY53922	Canola	plasma membrane	21.63	21.83
CDY08487	Canola	plasma membrane	21.16	21.82
CDY01068	Canola	plasma membrane	21.16	21.72
CDY42861	Canola	peroxisome	20.7	20.79
CDY47026	Canola	peroxisome, plastid	20.7	20.65
CDY54797	Canola	plastid	20.93	20.22
CDY59097	Canola	plastid	20.7	20.09

Protein Annotations

EnsemblPlants:CDX91000	EnsemblPlantsGene:GSBRNA2T00151760001	GO:A0A078DP25	InterPro:AA_transpt_TM	PANTHER:PTHR22950	PANTHER:PTHR22950:SF280
PFAM:PF01490	ProteinID:CDX91000	ProteinID:CDX91000.1	SEG:seg	TMHMM:TMhelix	UniParc:UPI0004EBD053
MapMan:24.2.3.4.7	:	:	:	:	:

Description

BnaC02g05970D

Coordinates

chrLK031865:-:232067..234670

Molecular Weight (calculated)

47276.1 Da

IEP (calculated)

8.373

GRAVY (calculated)

0.688

Length

430 amino acids

Sequence
(BLAST)

001: MMNEKEDIMS EPFIVKTIND EEATLHDYEL YNNNPQGNTS FSKTCFHGIN ALSGVGILSV PYALASGGWL SLIILFIIAI TTFYCAILIK RCMDMDPLLR
101: TYPDIGYKAF GNTGRVIVSI FMNLELYLVA TSFLILEGDN LNKLFSNVGI DFMGIEFGGK QMFIVLVALI ILPSVWLDDM RILSYISASG VFASGLILAS
201: IFWVGAFDGV GFKNQDSKIL RFNGVTTSVS LYMFCYCAHP VFPTLYTSMK NKRQFSNVMV ICFTICTFIY ASVAILGYLM YGSNVESQIT LNLPTDKLSS
301: KVAICTTLVN PIAKFALMVT PIVDAMRSRF MRNKKAGGLV LGTMLVASNV VVAMLLPFFG ELMSLVGAFL SASASVILPC LCYLKISGKY RRLGLETLVL
401: IGIVLIGIVV MITGTYKAVK DIFGQVLKSQ

Best Arabidopsis Sequence Match ( AT5G15240.1 )
(BLAST)

001: MSEDKDYMSE PFIVKKIDDE ESLLDDYNPQ GNTSFSKTCF HGINALSGVG ILSVPYALAS GGWLSLIILF TVAITTFYCA ILIKRCMEMD PLLRSYPDIG
101: YKAFGNTGRV IVSIFMNLEL YLVATSFLIL EGDNLNKLFS NVGLNFMGLE FQGKQMFIIM VALIILPSVW LDNMRILSYV SASGVFASGV ILASIFSVGA
201: FEGVGFKNND SEVFRLNGVA TSVSLYAFCY CAHPVFPTLY TSMKNKRQFS NVMIICFTIC TFIYASVAVL GYLMYGSDVE SQITLNLPTD KLSSKVAIWT
301: TLVNPIAKFA LMVTPIIDAM RSRFSRVLPN KRASGFLLST ILVTSNVIVA LLLPFFGDLM SLVGAFLSAS ASVILPCLCY LKISGKYQRL GFETLVLIGI
401: TLTGIVVVIT GTYQAVKDIF GRF

Arabidopsis Description

AVT1JAmino acid transporter AVT1J [Source:UniProtKB/Swiss-Prot;Acc:Q9LXF8]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.