CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
plasma membrane 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
golgi 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	nucleus, plasma membrane, plastid
BaCelLo:	nucleus
MultiLoc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY55127	Canola	cytosol, plasma membrane, plastid	92.24	93.66
CDY55126	Canola	plasma membrane	70.32	81.13
CDX80808	Canola	plasma membrane	30.02	70.36
CDX73974	Canola	cytosol, nucleus, plasma membrane	46.88	67.97
CDY07919	Canola	cytosol, nucleus, plasma membrane	60.37	67.8
CDX73972	Canola	extracellular, plastid	14.33	64.89
CDY40336	Canola	plasma membrane	58.52	63.44
CDY10463	Canola	plasma membrane	57.5	62.45
HORVU2Hr1G075350.2	Barley	endoplasmic reticulum, plasma membrane, vacuole	16.36	56.4
HORVU4Hr1G022660.1	Barley	extracellular	19.06	51.13
Solyc10g084830.1.1	Tomato	cytosol, peroxisome, plasma membrane	44.01	49.34
PGSC0003DMT400028760	Potato	cytosol, peroxisome, plasma membrane	43.51	48.77
CDY18351	Canola	plastid	39.97	46.56
CDX78269	Canola	plasma membrane	40.98	45.85
CDY44630	Canola	plasma membrane	41.99	45.36
CDX73443	Canola	cytosol, nucleus, plasma membrane	40.98	45.25
CDX74865	Canola	plasma membrane	41.82	44.93
CDX93284	Canola	cytosol, nucleus, plasma membrane	40.98	44.51
GSMUA_Achr6P34060_001	Banana	plasma membrane	40.3	43.3
Zm00001d032325_P001	Maize	mitochondrion, plasma membrane, vacuole	18.55	40.74
EES17245	Sorghum	cytosol, peroxisome, plasma membrane	39.46	40.62
CDY22507	Canola	plasma membrane	35.41	40.38
CDY35425	Canola	plasma membrane	35.24	40.19
CDX79951	Canola	cytosol, nucleus, plasma membrane	34.74	38.94
CDY23868	Canola	cytosol, nucleus, plasma membrane	34.74	38.94
CDY06942	Canola	cytosol, peroxisome, plasma membrane	34.74	38.58
CDY67831	Canola	cytosol, peroxisome, plasma membrane	34.57	38.46
Os12t0574000-01	Rice	plasma membrane	38.45	38.38
HORVU5Hr1G020560.3	Barley	plasma membrane	37.94	38.01
TraesCS5B01G084900.1	Wheat	plasma membrane	38.28	37.9
TraesCS5D01G091100.1	Wheat	plasma membrane	37.94	37.75
TraesCS5A01G081500.1	Wheat	plasma membrane	37.61	37.35
Zm00001d041534_P002	Maize	plasma membrane	37.77	36.78
Zm00001d030751_P001	Maize	plasma membrane	38.95	36.55
CDY44419	Canola	plasma membrane	24.79	36.3
CDX91000	Canola	plasma membrane	26.14	36.05
CDX85556	Canola	plasma membrane	25.97	35.9
CDX85233	Canola	plasma membrane	24.45	35.8
CDX86397	Canola	plasma membrane	24.45	35.8
Zm00001d031629_P001	Maize	cytosol, plasma membrane, vacuole	10.79	35.56
CDY38090	Canola	plasma membrane	23.95	32.79
CDY04048	Canola	plasma membrane	24.96	25.52
CDX85489	Canola	vacuole	18.55	25.46
CDY21456	Canola	plasma membrane	17.2	25.31
CDY70145	Canola	plasma membrane	17.03	25.06
CDY42861	Canola	peroxisome	17.37	24.07
CDX73848	Canola	plasma membrane	17.2	23.94
CDY53922	Canola	plasma membrane	17.2	23.94
CDY01068	Canola	plasma membrane	16.86	23.87
CDY08487	Canola	plasma membrane	16.69	23.74
CDY59097	Canola	plastid	17.71	23.7
CDY47026	Canola	peroxisome, plastid	17.2	23.67
CDY54797	Canola	plastid	17.54	23.37

Protein Annotations

EnsemblPlants:CDX80809	EnsemblPlantsGene:GSBRNA2T00134197001	GO:A0A078CXP6	InterPro:AA_transpt_TM	ncoils:Coil	PANTHER:PTHR22950
PANTHER:PTHR22950:SF313	PFAM:PF01490	ProteinID:CDX80809	ProteinID:CDX80809.1	SEG:seg	TMHMM:TMhelix
UniParc:UPI0004EEB922	MapMan:24.2.3.4.7	:	:	:	:

Description

BnaC03g00630D

Coordinates

chrLK031823:+:314952..317876

Molecular Weight (calculated)

65138.9 Da

IEP (calculated)

7.763

GRAVY (calculated)

0.397

Length

593 amino acids

Sequence
(BLAST)

001: MSKWCSKATC AIFSFLEEDL HLLGESTYNI DKEKHILRYG YKSALPPQVR STLFFSASPL VFVTETYKKK MKQEEQERED LYHTDDDEDE ESQAHSSVPS
101: TPLSRNDSNN DAVPWPRSYR QSMDLLTGVT PPISTNLVSS FRKRRQSSAF GSFASSSSKQ SLLIYKDETQ NSVVTSIKSF IDSHLKLSVP DDLSIPQENR
201: KCTISQSLLN GINVLCGGAL LTMPYALKEG GWLGLLILFS FGIITLYTGI LLKRCLENSP GIHTYPDIGQ AAFGTTGRIL LSIFLYADLY ATCVEYIIMM
301: SDNMSGMFPN TSLYIAGISL NSNQVFAITT TLIVLPTVWL RDLSLLSYIS AGGVFSSILL ALCLFWVGSV GGVGFQLQGQ VLDLTNLPVA IGIYGFGFGG
401: HAVLPNIYSS MKEPSKFSLV LLMSFGFCTL FYIAISVCGY TMFGEAIQSQ FTLNMPQHFT SSKIAVWTAV ITPMTKYPLT LTPVLLSLEE LLPSSSRKMK
501: SKGVSVLIRT LLVFSTLVVA LTVPFFATIA ALIGSFVAML IAVIFPCLCY LKIMKGRLTN FQMAICILII IVGVVSGCCG TYSAIVRLIG EMT

Best Arabidopsis Sequence Match ( AT5G02170.1 )
(BLAST)

001: MKQNETFDQE REDLYHTFDE EDEESQTESS VPSTPLSRNR SEDVPVPWPR SYRQSMDLLT GVTPPTSTSF VSSFRQRRQS SVFGSFTSSP SKQQLLIDKD
101: EIQSSVVSSI KSFLASHLQL SVPGDLLTPQ ENRSCTFSQS VLNGINVLCG VALLTMPYAV KEGGWLGLFI LFSFGIITFY TGILLKRCLE NSPGIHTYPD
201: IGQAAFGTTG RILVSILLYV ELYASCVEYI IMMSDNLSRM FPNTSLYING FSLDSTQVFA ITTTLIVLPT VWLKDLSLLS YLSAGGVISS ILLALCLFWA
301: GSVDGVGFHI SGQALDITNI PVAIGIYGFG FGSHSVFPNI YSSMKEPSKF PTVLLISFAF CTLFYIAVAV CGFTMFGDAI QSQFTLNMPP HFTSSKIAVW
401: TAVVTPMTKY ALTITPVMLS LEELIPSSSR KMRSKGVSML FRTILVLSTL VVALTVPFFA TVAALIGSFI AMLIALIFPC LCYISIMKGR LTNFQIGICI
501: LIVIIGIVSG CCGTYSAIAR LIGEMT

Arabidopsis Description

AVT1EAmino acid transporter AVT1E [Source:UniProtKB/Swiss-Prot;Acc:Q8LPF4]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.