CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 1
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plasma membrane
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra001315.1-P	Field mustard	cytosol, peroxisome, plasma membrane	97.54	97.54
CDX73974	Canola	cytosol, nucleus, plasma membrane	75.19	97.07
CDX73972	Canola	extracellular, plastid	23.67	95.42
AT3G09330.1	Thale cress	cytosol, nucleus, plasma membrane	80.87	81.49
AT3G09340.1	Thale cress	plasma membrane	78.6	78.6
CDY55126	Canola	plasma membrane	66.1	67.9
CDY40336	Canola	plasma membrane	66.1	63.8
CDY10463	Canola	plasma membrane	65.34	63.19
CDX80808	Canola	plasma membrane	29.55	61.66
CDY55127	Canola	cytosol, plasma membrane, plastid	68.18	61.64
CDX80809	Canola	plasma membrane	67.8	60.37
HORVU2Hr1G075350.2	Barley	endoplasmic reticulum, plasma membrane, vacuole	18.75	57.56
HORVU4Hr1G022660.1	Barley	extracellular	23.11	55.2
GSMUA_Achr6P34060_001	Banana	plasma membrane	50.19	48.01
CDY18351	Canola	plastid	45.83	47.54
Solyc10g084830.1.1	Tomato	cytosol, peroxisome, plasma membrane	46.78	46.69
PGSC0003DMT400028760	Potato	cytosol, peroxisome, plasma membrane	46.59	46.5
CDY44630	Canola	plasma membrane	48.11	46.27
CDX78269	Canola	plasma membrane	46.4	46.23
CDX74865	Canola	plasma membrane	48.11	46.01
CDX73443	Canola	cytosol, nucleus, plasma membrane	46.21	45.44
CDX93284	Canola	cytosol, nucleus, plasma membrane	46.59	45.05
Zm00001d032325_P001	Maize	mitochondrion, plasma membrane, vacuole	21.21	41.48
EES17245	Sorghum	cytosol, peroxisome, plasma membrane	44.7	40.97
CDY22507	Canola	plasma membrane	40.34	40.96
CDY35425	Canola	plasma membrane	40.15	40.77
CDX79951	Canola	cytosol, nucleus, plasma membrane	40.72	40.64
HORVU5Hr1G020560.3	Barley	plasma membrane	45.45	40.54
CDY23868	Canola	cytosol, nucleus, plasma membrane	40.53	40.45
CDY06942	Canola	cytosol, peroxisome, plasma membrane	40.34	39.89
CDY67831	Canola	cytosol, peroxisome, plasma membrane	40.15	39.77
TraesCS5D01G091100.1	Wheat	plasma membrane	44.89	39.77
TraesCS5B01G084900.1	Wheat	plasma membrane	45.08	39.73
TraesCS5A01G081500.1	Wheat	plasma membrane	44.51	39.36
Os12t0574000-01	Rice	plasma membrane	43.94	39.06
CDX91000	Canola	plasma membrane	31.25	38.37
CDX85556	Canola	plasma membrane	30.87	38.0
Zm00001d030751_P001	Maize	plasma membrane	45.08	37.66
Zm00001d041534_P002	Maize	plasma membrane	43.37	37.6
Zm00001d031629_P001	Maize	cytosol, plasma membrane, vacuole	12.5	36.67
CDX85233	Canola	plasma membrane	27.65	36.05
CDY44419	Canola	plasma membrane	27.65	36.05
CDX86397	Canola	plasma membrane	27.46	35.8
CDY38090	Canola	plasma membrane	27.27	33.26
CDX85489	Canola	vacuole	22.16	27.08
CDY04048	Canola	plasma membrane	27.46	25.0
CDY42861	Canola	peroxisome	20.08	24.77
CDY21456	Canola	plasma membrane	18.75	24.57
CDY47026	Canola	peroxisome, plastid	19.89	24.36
CDY70145	Canola	plasma membrane	18.56	24.32
CDY53922	Canola	plasma membrane	18.94	23.47
CDX73848	Canola	plasma membrane	18.94	23.47
CDY59097	Canola	plastid	19.51	23.25
CDY54797	Canola	plastid	19.51	23.15
CDY01068	Canola	plasma membrane	17.99	22.67
CDY08487	Canola	plasma membrane	17.8	22.54

Protein Annotations

EnsemblPlants:CDY07919	EnsemblPlantsGene:GSBRNA2T00125119001	GO:A0A078F4F3	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:AA_transpt_TM	PANTHER:PTHR22950	PANTHER:PTHR22950:SF313	PFAM:PF01490	ProteinID:CDY07919	ProteinID:CDY07919.1
SEG:seg	TMHMM:TMhelix	UniParc:UPI0004EE70CE	UniProt:A0A078F4F3	MapMan:24.2.3.4.7	:

Description

BnaC03g36040DBnaC03g36040D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F4F3]

Coordinates

chrLK031982:-:105259..108219

Molecular Weight (calculated)

57526.5 Da

IEP (calculated)

4.935

GRAVY (calculated)

0.574

Length

528 amino acids

Sequence
(BLAST)

001: MKLEDQESDI LFQTDDEESQ VDVFCNDEDE ISRKSSQLSM NDSAPWPRSY RQSVDILTGV TPPTTSFIHR RGSQASSFTS SIASLYKRRP NSILNSFASS
101: TSKQPLLTDK DDVSVKSYVS SQLKLSITDL SYEEQNLCSF PQSVLNGINI LCGVSLLTMP YAVKEGGWLG LIILFFFGII TCYTGILLKR CLESSPDIHT
201: YPDIGQAAFG FSGRLIVSIL LYMELYACCV EYIIMMSDNL SRFFPSVSLN VAGVSIDSSQ IFAIATALIV LPTVWLRDLS LLSYLSAGGV FSSILLALCL
301: FWVGSVDGIG FHSGGQALDL SNLPVAIGIF GFGFSGHAVF PNIYSSMKDP SKFPLVLIIS FGFCVVFYIA VAVCGYSMFG EAIQSQFTLS MPQQFTSSKI
401: AVWTAVITPM TKYALTLTPI VLSLEELMPS SEKMISNGVS MFLRTILVLS TLVVALEFPF FAIMGALMGS FLSMLLAFIL PCLCYLSILR GRLSKIQMGV
501: CVLIIIAGIV SGCCGTYSAI GKLVGERS

Best Arabidopsis Sequence Match ( AT3G09330.1 )
(BLAST)

001: MELEEQERDI LFPTDDEECQ VDVSCDDEDD DSSSYSSLSQ NDSAPWPRSY RQSVDILTGV TPPTISFIHR RSSQTSFTSS VASLYKRRPT SIANSFASST
101: SKQPLLSEKD DVLFLSSQIG LSNTDLSYGE PNFCSFPQSV LNGINVLCGI SLLTMPYAVK EGGWLGLCIL LSFAIITCYT GILLKRCLES SSDLRTYPDI
201: GQAAFGFTGR LIISILLYME LYVCCVEYII MMSDNLSRVF PNITLNIVGV SLDSPQIFAI SATLIVLPTV WLKDLSLLSY LSAGGVFVSI LLALCLFWVG
301: SVDGVGFHTG GKSLDLANLP VAIGIFGFGF SGHAVLPSIY SSMKEPSKFP LVLLISFGFC VFFYIVVAIC GYSMFGEAIQ SQFTLNMPQQ YTASKIAVWT
401: AVVVPMTKYA LALTPIVLGL EELMLPSEKM RSYGVSIFIK TILVLSTLVV ALTFPFFAIM GALMGSFLAM LVDFIFPCLC YLSILKGRLS KTQIGICVFI
501: IISGIVSGCC GTYSAIGRLV GKLD

Arabidopsis Description

AVT1GAmino acid transporter AVT1G [Source:UniProtKB/Swiss-Prot;Acc:Q1PER9]
SUBAcon: [plasma membrane,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.