Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 1
- mitochondrion 1
- plasma membrane 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT3G09330.1 | Thale cress | cytosol, nucleus, plasma membrane | 92.61 | 93.32 |
| Bra001315.1-P | Field mustard | cytosol, peroxisome, plasma membrane | 79.17 | 79.17 |
| CDY07919 | Canola | cytosol, nucleus, plasma membrane | 78.6 | 78.6 |
| AT5G02170.1 | Thale cress | plasma membrane | 66.1 | 66.35 |
| AT5G02180.1 | Thale cress | plasma membrane | 64.58 | 62.0 |
| HORVU2Hr1G075350.2 | Barley | endoplasmic reticulum, plasma membrane, vacuole | 18.94 | 58.14 |
| HORVU4Hr1G022660.1 | Barley | extracellular | 22.35 | 53.39 |
| PGSC0003DMT400028760 | Potato | cytosol, peroxisome, plasma membrane | 48.67 | 48.58 |
| Solyc10g084830.1.1 | Tomato | cytosol, peroxisome, plasma membrane | 48.48 | 48.39 |
| AT2G39130.2 | Thale cress | cytosol, nucleus, plasma membrane | 48.3 | 46.36 |
| GSMUA_Achr6P34060_001 | Banana | plasma membrane | 47.92 | 45.83 |
| AT3G54830.1 | Thale cress | nucleus | 43.56 | 42.12 |
| EES17245 | Sorghum | cytosol, peroxisome, plasma membrane | 44.51 | 40.8 |
| HORVU5Hr1G020560.3 | Barley | plasma membrane | 45.45 | 40.54 |
| AT2G41190.1 | Thale cress | cytosol, peroxisome, plasma membrane | 40.53 | 39.93 |
| TraesCS5B01G084900.1 | Wheat | plasma membrane | 45.27 | 39.9 |
| TraesCS5D01G091100.1 | Wheat | plasma membrane | 44.89 | 39.77 |
| TraesCS5A01G081500.1 | Wheat | plasma membrane | 44.7 | 39.53 |
| Os12t0574000-01 | Rice | plasma membrane | 43.56 | 38.72 |
| AT5G15240.1 | Thale cress | plasma membrane | 30.87 | 38.53 |
| Zm00001d032325_P001 | Maize | mitochondrion, plasma membrane, vacuole | 19.7 | 38.52 |
| Zm00001d041534_P002 | Maize | plasma membrane | 42.42 | 36.78 |
| Zm00001d030751_P001 | Maize | plasma membrane | 43.94 | 36.71 |
| Zm00001d031629_P001 | Maize | cytosol, plasma membrane, vacuole | 12.31 | 36.11 |
| AT3G28960.2 | Thale cress | plasma membrane | 27.46 | 35.8 |
| AT5G16740.1 | Thale cress | plasma membrane | 26.14 | 32.39 |
| AT2G42005.1 | Thale cress | plasma membrane | 19.32 | 24.7 |
| AT4G38250.1 | Thale cress | plasma membrane | 19.32 | 23.39 |
| AT5G65990.1 | Thale cress | endoplasmic reticulum, peroxisome, plasma membrane, plastid | 18.75 | 23.18 |
| AT3G11900.2 | Thale cress | plasma membrane | 18.37 | 22.45 |
Protein Annotations
| MapMan:24.2.3.4.7 | EntrezGene:820090 | ProteinID:AAF14031.1 | InterPro:AA_transpt_TM | ProteinID:AEE74752.1 | ArrayExpress:AT3G09340 |
| EnsemblPlantsGene:AT3G09340 | RefSeq:AT3G09340 | TAIR:AT3G09340 | RefSeq:AT3G09340-TAIR-G | EnsemblPlants:AT3G09340.1 | TAIR:AT3G09340.1 |
| UniProt:F4IZW8 | GO:GO:0003333 | GO:GO:0003674 | GO:GO:0005215 | GO:GO:0005575 | GO:GO:0006810 |
| GO:GO:0006865 | GO:GO:0008150 | GO:GO:0015171 | GO:GO:0016020 | GO:GO:0016021 | RefSeq:NP_187545.2 |
| PFAM:PF01490 | PANTHER:PTHR22950 | PANTHER:PTHR22950:SF313 | TMHMM:TMhelix | UniParc:UPI000034F071 | SEG:seg |
Description
AVT1FAmino acid transporter AVT1F [Source:UniProtKB/Swiss-Prot;Acc:F4IZW8]
Coordinates
chr3:-:2867912..2870600
Molecular Weight (calculated)
57455.4 Da
IEP (calculated)
4.527
GRAVY (calculated)
0.627
Length
528 amino acids
Sequence
(BLAST)
(BLAST)
001: MDLEEQERDI LIQTDDDDCH VDVSYVNDDD DSNASFSLSQ NDSAFWPQSY RHSVDLLTGV TPPMVSFIQG RSTETSFSSS IASLYKRRPT SIANSFVSST
101: SKQPLLSEKD DVSFLSSQVG LSNTDLSYGE PNFCSFPQSV LNGINVLCGI SLLTMPYAVK EGGWLGLCIL LSFAIITCYT GILLKRCLES SSDLRTYPDI
201: GQAAFGFTGR LIISILLYME LYVCCVEYII MMSDNLSRVF PNITLNIVGV SLDSPQIFAI SATLIVLPTV WLKDLSLLSY LSAGGVFVSI LLALCLFWVG
301: SVDGVGFHTG GKALDLANLP VAIGIFGFGF SGHAVLPSIY SSMKEPSKFP LVLLISFGFC VFFYIAVAIC GYSMFGEAIQ SQFTLNMPQQ YTASKIAVWT
401: AVVVPMTKYA LALTPIVLGL EELMPPSEKM RSYGVSIFIK TILVLSTLVV ALTFPFFAIM GALMGSFLAT LVDFIFPCLC YLSILKGRLS KTQIGICVFI
501: IISGIVSGCC GTYSAIGRLV GELNWMVQ
101: SKQPLLSEKD DVSFLSSQVG LSNTDLSYGE PNFCSFPQSV LNGINVLCGI SLLTMPYAVK EGGWLGLCIL LSFAIITCYT GILLKRCLES SSDLRTYPDI
201: GQAAFGFTGR LIISILLYME LYVCCVEYII MMSDNLSRVF PNITLNIVGV SLDSPQIFAI SATLIVLPTV WLKDLSLLSY LSAGGVFVSI LLALCLFWVG
301: SVDGVGFHTG GKALDLANLP VAIGIFGFGF SGHAVLPSIY SSMKEPSKFP LVLLISFGFC VFFYIAVAIC GYSMFGEAIQ SQFTLNMPQQ YTASKIAVWT
401: AVVVPMTKYA LALTPIVLGL EELMPPSEKM RSYGVSIFIK TILVLSTLVV ALTFPFFAIM GALMGSFLAT LVDFIFPCLC YLSILKGRLS KTQIGICVFI
501: IISGIVSGCC GTYSAIGRLV GELNWMVQ
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.