CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, cytosol, plasma membrane

Predictor Summary:

nucleus 1
cytosol 1
mitochondrion 1
plasma membrane 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, peroxisome, plasma membrane
Any Predictor:	cytosol, nucleus, peroxisome, plasma membrane
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY06942	Canola	cytosol, peroxisome, plasma membrane	99.06	98.88
Bra016949.1-P	Field mustard	cytosol, peroxisome, plasma membrane	98.87	98.69
CDY35425	Canola	plasma membrane	90.43	92.69
CDY22507	Canola	plasma membrane	89.68	91.92
AT2G41190.1	Thale cress	cytosol, peroxisome, plasma membrane	88.37	87.87
CDY23868	Canola	cytosol, nucleus, plasma membrane	85.74	86.39
CDX79951	Canola	cytosol, nucleus, plasma membrane	85.55	86.2
PGSC0003DMT400080507	Potato	peroxisome	60.79	61.95
Solyc03g078150.2.1	Tomato	peroxisome	60.6	61.52
VIT_08s0007g05210.t01	Wine grape	plasma membrane	59.29	61.12
TraesCS6A01G348300.2	Wheat	cytosol, plasma membrane, vacuole	53.1	59.33
KRH16006	Soybean	cytosol	37.34	58.36
TraesCS6A01G348400.1	Wheat	cytosol, peroxisome, plasma membrane	57.79	58.22
GSMUA_Achr11P...	Banana	cytosol, peroxisome, plasma membrane	58.91	58.15
TraesCS6B01G382000.2	Wheat	cytosol, peroxisome, plasma membrane	57.6	57.06
TraesCS6D01G331400.2	Wheat	cytosol, peroxisome, plasma membrane	57.22	56.8
TraesCS6D01G331300.1	Wheat	plasma membrane	54.78	56.7
Zm00001d018336_P002	Maize	plasma membrane	57.04	55.58
Zm00001d052063_P003	Maize	plasma membrane	56.29	55.56
EES07657	Sorghum	plasma membrane	54.22	55.36
KRG95106	Soybean	cytosol, peroxisome, plasma membrane	47.65	55.22
EES07655	Sorghum	plasma membrane	56.85	54.99
TraesCS6B01G381900.1	Wheat	plasma membrane	52.35	54.6
KRH77523	Soybean	cytosol, nucleus, plasma membrane	48.41	54.55
Zm00001d018340_P001	Maize	cytosol, peroxisome, plasma membrane	52.53	53.03
HORVU6Hr1G083720.2	Barley	plastid	57.04	52.23
KRH66774	Soybean	plasma membrane	25.52	50.94
Os02t0788800-01	Rice	cytosol, peroxisome, plasma membrane	29.27	48.3
CDY18351	Canola	plastid	40.53	42.44
CDX78269	Canola	plasma membrane	41.28	41.51
CDX73443	Canola	cytosol, nucleus, plasma membrane	41.65	41.34
CDY55126	Canola	plasma membrane	39.77	41.25
CDY44630	Canola	plasma membrane	42.03	40.8
CDY44419	Canola	plasma membrane	30.96	40.74
CDX74865	Canola	plasma membrane	41.84	40.4
CDX73974	Canola	cytosol, nucleus, plasma membrane	30.96	40.34
CDX93284	Canola	cytosol, nucleus, plasma membrane	41.28	40.29
CDX85233	Canola	plasma membrane	30.58	40.25
CDX86397	Canola	plasma membrane	30.58	40.25
CDY40336	Canola	plasma membrane	41.28	40.22
CDY07919	Canola	cytosol, nucleus, plasma membrane	39.77	40.15
CDY10463	Canola	plasma membrane	40.9	39.93
CDX91000	Canola	plasma membrane	30.58	37.91
CDX85556	Canola	plasma membrane	30.21	37.53
CDX80808	Canola	plasma membrane	17.45	36.76
CDX73972	Canola	extracellular, plastid	9.01	36.64
CDX80809	Canola	plasma membrane	38.46	34.57
CDY55127	Canola	cytosol, plasma membrane, plastid	37.71	34.42
CDY38090	Canola	plasma membrane	23.08	28.41
CDY04048	Canola	plasma membrane	30.58	28.1
CDY70145	Canola	plasma membrane	19.7	26.05
CDY21456	Canola	plasma membrane	19.32	25.56
CDY54797	Canola	plastid	19.32	23.15
CDY59097	Canola	plastid	19.14	23.02
CDY01068	Canola	plasma membrane	17.82	22.67
CDY08487	Canola	plasma membrane	17.45	22.3
CDY53922	Canola	plasma membrane	17.82	22.3
CDX73848	Canola	plasma membrane	17.82	22.3
CDY42861	Canola	peroxisome	17.82	22.2
CDY47026	Canola	peroxisome, plastid	17.82	22.04
CDX85489	Canola	vacuole	17.64	21.76

Protein Annotations

EnsemblPlants:CDY67831	EnsemblPlantsGene:GSBRNA2T00066920001	GO:A0A078JQ97	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:AA_transpt_TM	ncoils:Coil	PANTHER:PTHR22950	PANTHER:PTHR22950:SF358	PFAM:PF01490	ProteinID:CDY67831
ProteinID:CDY67831.1	SEG:seg	TMHMM:TMhelix	UniParc:UPI0004EE5D61	UniProt:A0A078JQ97	MapMan:24.2.3.4.7

Description

BnaCnng56610DBnaCnng56610D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JQ97]

Coordinates

chrLK036553:-:2062..5219

Molecular Weight (calculated)

58576.0 Da

IEP (calculated)

4.662

GRAVY (calculated)

0.362

Length

533 amino acids

Sequence
(BLAST)

001: MDVNNKDKEK KIEFTFEDDE DLEDTSKYEN DSDNTDQSDL GDLPGDDDNN NDDTFISQVQ WPQSFRETTD SYTIAASPIF GSLLSNPSFY TPSFYRQSKS
101: NLDVESKAPL LPERNEESDK ASVTQSVWSH KGSFAEELPI GGYGCSFTQT IFNAINVMAG VGLLSTPFTV KEAGWASMVI LLLFAVICCY TASLMKDCFE
201: AKTGIITYPD IGEAAFGKYG RILICVILYT ELYSYCVEFI ILEGDNLTGL FPGTSIDWLG IRIDSKHLFG IFTALVVLPT VWLKDLRIIS YLSAGGVIAT
301: VLIAVSTFFL GTTGGIGFHH TGPAVKWNGI PFAIGIYGFC YSGHSVIPNI YQSMADKTKF NKAVITTFIL CVFLYGGVAI MGYCMFGEAT LSQITLNMPK
401: GLFFSKVAQW TTVVSPFTKY ALLMNPLARS IEELLPERIS ENIWCFLLLR TALVASSVCS AFLIPFFGLV MALIGSFLSI LVAIVMPALC FIRIMGNKAT
501: RTQMILSSII VVIGLVSGAL GTYSSVTKII RNY

Best Arabidopsis Sequence Match ( AT2G41190.1 )
(BLAST)

001: MEDKNNDKEK KTDVTFEDDE DNEDLEDNSS KYENDSETDQ SDLGDLPGDA VDRDDDIDEP FISQVQWPQS FRETTDSYTI AASPIFGSLR SNPPSFYRAS
101: RSNLDVESKA PLLPERHDDS DKASATQSAW SHKGSFAEEL PIGGYGCSVI QTIFNAINVM AGVGLLSTPY TVKEAGWASM VILLLFAVIC CYTATLMKDC
201: FENKTGIITY PDIGEAAFGK YGRILICMLL YTELYSYCVE FIILEGDNLT GLFPGTSLDL LGFRLDSKHL FGILTALIVL PTVWLKDLRI ISYLSAGGVI
301: ATALIAVSVF FLGTTGGIGF HHTGQAVKWN GIPFAIGIYG FCYSGHSVFP NIYQSMADKT KFNKAVITCF IICVLLYGGV AIMGYLMFGE ATLSQITLNM
401: PQDQFFSKVA QWTTVVSPFT KYALLMNPLA RSIEELLPER MSENIWCFLL LRTALVASSV CSAFLIPFFG LMMALIGSLL SILVAIIMPA LCFIKIMGNK
501: ATRTQMILSS IIVAIGVVSG TLGTYSSVAK IIRNYQ

Arabidopsis Description

AVT1AAmino acid transporter AVT1A [Source:UniProtKB/Swiss-Prot;Acc:O80668]
SUBAcon: [peroxisome,cytosol,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.