Factsheet for Zm00001d018340_P001

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, cytosol, plasma membrane

Predictor Summary:

cytosol 1
mitochondrion 1
plasma membrane 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, peroxisome, plasma membrane
Any Predictor:	cytosol, mitochondrion, peroxisome
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES07657	Sorghum	plasma membrane	88.83	89.85
Zm00001d018336_P002	Maize	plasma membrane	66.48	64.17
Zm00001d052063_P003	Maize	plasma membrane	64.96	63.52
GSMUA_Achr11P...	Banana	cytosol, peroxisome, plasma membrane	56.25	55.0
Bra000217.1-P	Field mustard	plasma membrane	53.41	54.23
CDY35425	Canola	plasma membrane	53.41	54.23
CDY22507	Canola	plasma membrane	53.22	54.04
AT2G41190.1	Thale cress	cytosol, peroxisome, plasma membrane	54.36	53.54
PGSC0003DMT400080507	Potato	peroxisome	52.65	53.15
Solyc03g078150.2.1	Tomato	peroxisome	52.65	52.95
CDY23868	Canola	cytosol, nucleus, plasma membrane	53.03	52.93
CDY06942	Canola	cytosol, peroxisome, plasma membrane	53.41	52.81
Bra004605.1-P	Field mustard	cytosol, nucleus, plasma membrane	52.84	52.74
CDX79951	Canola	cytosol, nucleus, plasma membrane	52.84	52.74
Bra016949.1-P	Field mustard	cytosol, peroxisome, plasma membrane	53.22	52.62
CDY67831	Canola	cytosol, peroxisome, plasma membrane	53.03	52.53
VIT_08s0007g05210.t01	Wine grape	plasma membrane	50.19	51.26
KRH16006	Soybean	cytosol	31.25	48.39
Zm00001d044994_P001	Maize	cytosol, plasma membrane, vacuole	13.83	47.71
KRG95106	Soybean	cytosol, peroxisome, plasma membrane	40.91	46.96
KRH33027	Soybean	plasma membrane	50.95	46.14
KRH71933	Soybean	cytosol, peroxisome, plasma membrane	37.69	44.62
KRH77523	Soybean	cytosol, nucleus, plasma membrane	38.64	43.13
Zm00001d037229_P001	Maize	plasma membrane	31.82	42.11
KRH66774	Soybean	plasma membrane	21.21	41.95
Zm00001d043640_P001	Maize	plasma membrane	12.88	40.24
Zm00001d003422_P001	Maize	cytosol, plasma membrane, vacuole	33.52	38.65
Zm00001d048577_P001	Maize	cytosol, nucleus, plasma membrane	40.53	37.74
Zm00001d004340_P002	Maize	plasma membrane	39.77	36.84
Zm00001d032325_P001	Maize	mitochondrion, plasma membrane, vacuole	17.61	34.44
Zm00001d037057_P001	Maize	cytosol, nucleus, plasma membrane	32.95	33.08
Zm00001d041534_P002	Maize	plasma membrane	36.36	31.53
Zm00001d004633_P001	Maize	plasma membrane	27.27	31.03
Zm00001d030751_P001	Maize	plasma membrane	37.12	31.01
Zm00001d031629_P001	Maize	cytosol, plasma membrane, vacuole	10.23	30.0
Zm00001d019225_P001	Maize	plasma membrane	20.45	25.23
Zm00001d017557_P001	Maize	plastid	19.7	24.07
Zm00001d026121_P001	Maize	cytosol, peroxisome, plasma membrane, plastid	19.32	20.61
Zm00001d044387_P001	Maize	nucleus	29.36	18.11

Protein Annotations

EMBL:BT068131	EnsemblPlants:Zm00001d018340_P001	EnsemblPlants:Zm00001d018340_T001	EnsemblPlantsGene:Zm00001d018340	EntrezGene:100383728	GO:GO:0005575
GO:GO:0016020	GO:GO:0016021	InterPro:AA_transpt_TM	PANTHER:PTHR22950	PANTHER:PTHR22950:SF358	PFAM:PF01490
ProteinID:AQK75650.1	SEG:seg	TMHMM:TMhelix	UniParc:UPI000195CEA7	UniProt:C0PIL2	MapMan:24.2.3.4.7

Description

Transmembrane amino acid transporter family protein

Coordinates

chr5:+:218861910..218865592

Molecular Weight (calculated)

57249.4 Da

IEP (calculated)

4.627

GRAVY (calculated)

0.464

Length

528 amino acids

Sequence
(BLAST)

001: MAAAEEEEEW EDGRSVMPEE EDGDIEDVPP PPLLGRNFGS EDEDEDEAGS LNSQSQWWPR SFREATDTYT IAAPPGLRHL VVGDCNGLGS DLKLPLLSDK
101: LDGRQDSSNN LLPVADPFGS VLSDGRFSDR VQQAPTTPGC NLTQTVFNGV NVLAGIGIFS APYTIREAGW ASLVVLAFFA VVCCYTGVLL KYCFESKDGV
201: KTFPDIGELA FGRIGRFLIS IVLYTELYSF CVEFVILEGD NLASIFTSTT FDWNGIHADG RHFFGILFAL VVLPSVWLRD LRVISYLSVG GVFATLLVFL
301: SVGVVGATGN VGFHLAGKAV KWDGIPFAIG IYGFCYAGHS VFPNIYQSMS DRTKFNKALY ICFAICTTIY GAIAVIGYLM FGDKTLSQIT LNLPKDSFVA
401: KVALGTTVII PFTKYSLVIN PLARSIEELR PEGFLTDRLF AVMLRTAIVA STLCVAFLLP FFGLVMALIG SLLSILVALI MPALCFLKIA RNKATRLQVI
501: ASVATVVLGS VCAVLGTYNS IAKIAESY

Best Arabidopsis Sequence Match ( AT2G39130.1 )
(BLAST)

001: MNHVPSDQSF YIESEDEDDR KDYVEEDGGS HSDSSDDVYD ENQAHIKPSS YTTAWPQSYR QSIDLYSSVP SPGIGFLGNN SMTRFGSSFL SSGLIRRHTP
101: ESLPTVTKPL LEEQADEQAL PKHRLSSQGL LSPIPSRRGS MRKDEKSSMV SHEIPMSRNS SYGQAVLNGL NVLCGVGILS TPYAAKEGGW LGLMILFVYG
201: LLSFYTGILL RYCLDSESDL ETYPDIGQAA FGTTGRIFVS IVLYLELYAC CVEYIILESD NLSSLYPNAA LSIGGFQLDA RHLFALLTTL AVLPTVWLRD
301: LSVLSYISAG GVIASVLVVL CLFWIGLVDE VGIHSKGTTL NLSTLPVAIG LYGYCYSGHA VFPNIYTSMA KPSQYPAVLL TCFGICTLMY AGVAVMGYTM
401: FGESTQSQFT LNLPQDLIAT KIAVWTTVVN PFTKYALTIS PVAMSLEELI PSRHIRSHWY AIGIRTLLVF STLLVGLAIP FFGLVMSLIG SLLTMLVTLI
501: LPPACFLSIV RRKVTPTQMM LCVLIIIVGA ISSVIGSYSA LSKIVEKLTN

Arabidopsis Description

AVT1CAmino acid transporter AVT1C [Source:UniProtKB/Swiss-Prot;Acc:F4IUW3]
SUBAcon: [plasma membrane,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.