CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
plasma membrane 3
golgi 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	nucleus, peroxisome, secretory
BaCelLo:	nucleus
MultiLoc:	plasma membrane
Plant-mPloc:	golgi
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra033075.1-P	Field mustard	plasma membrane	100.0	100.0
CDX86397	Canola	plasma membrane	93.09	93.09
CDX85233	Canola	plasma membrane	92.84	92.84
AT3G28960.2	Thale cress	plasma membrane	88.15	88.15
CDY04048	Canola	plasma membrane	97.78	68.28
VIT_14s0108g00690.t01	Wine grape	plasma membrane	60.74	58.99
VIT_14s0108g00630.t01	Wine grape	plasma membrane	60.25	57.01
VIT_06s0061g00570.t01	Wine grape	plasma membrane	35.56	56.03
PGSC0003DMT400076795	Potato	plasma membrane	46.42	55.95
KRH40411	Soybean	plasma membrane	37.04	55.76
VIT_14s0108g00620.t01	Wine grape	plasma membrane	58.52	55.37
KRH40095	Soybean	plasma membrane	57.78	54.93
KRH01177	Soybean	plasma membrane	57.28	54.08
KRH40094	Soybean	plasma membrane	56.79	53.86
VIT_06s0009g01140.t01	Wine grape	plasma membrane	55.8	53.68
KRH30199	Soybean	extracellular, plasma membrane	49.38	53.62
PGSC0003DMT400076791	Potato	plasma membrane	54.81	52.86
PGSC0003DMT400008751	Potato	plasma membrane	54.81	52.11
Solyc03g013160.2.1	Tomato	plasma membrane	54.32	51.64
CDX85556	Canola	plasma membrane	54.32	51.28
CDX91000	Canola	plasma membrane	54.32	51.16
KRG98784	Soybean	plasma membrane	45.93	50.54
Solyc03g013440.2.1	Tomato	plasma membrane	42.72	50.0
KRG98240	Soybean	plasma membrane	52.35	48.51
KRH30194	Soybean	plasma membrane	52.1	48.28
KRH75803	Soybean	mitochondrion	29.63	38.34
CDX80808	Canola	plasma membrane	20.0	32.02
CDY35425	Canola	plasma membrane	40.99	31.92
CDY22507	Canola	plasma membrane	40.74	31.73
CDY67831	Canola	cytosol, peroxisome, plasma membrane	40.74	30.96
CDY06942	Canola	cytosol, peroxisome, plasma membrane	40.74	30.9
CDY23868	Canola	cytosol, nucleus, plasma membrane	39.51	30.25
CDX79951	Canola	cytosol, nucleus, plasma membrane	39.26	30.06
CDX73972	Canola	extracellular, plastid	9.38	29.01
CDY38090	Canola	plasma membrane	30.12	28.18
CDY18351	Canola	plastid	34.81	27.7
CDY07919	Canola	cytosol, nucleus, plasma membrane	36.05	27.65
CDY10463	Canola	plasma membrane	37.04	27.47
CDY55126	Canola	plasma membrane	34.81	27.43
CDY40336	Canola	plasma membrane	36.79	27.24
CDY44630	Canola	plasma membrane	35.56	26.23
CDX74865	Canola	plasma membrane	35.56	26.09
CDX73974	Canola	cytosol, nucleus, plasma membrane	26.17	25.92
CDX78269	Canola	plasma membrane	33.83	25.85
CDX73443	Canola	cytosol, nucleus, plasma membrane	33.83	25.51
CDX93284	Canola	cytosol, nucleus, plasma membrane	34.32	25.46
CDY55127	Canola	cytosol, plasma membrane, plastid	35.8	24.83
CDX80809	Canola	plasma membrane	36.3	24.79
CDY70145	Canola	plasma membrane	23.21	23.33
CDY21456	Canola	plasma membrane	22.96	23.08
CDX85489	Canola	vacuole	23.46	21.99
CDY42861	Canola	peroxisome	22.96	21.73
CDY47026	Canola	peroxisome, plastid	22.96	21.58
CDY53922	Canola	plasma membrane	22.22	21.13
CDX73848	Canola	plasma membrane	22.22	21.13
CDY59097	Canola	plastid	22.96	20.99
CDY54797	Canola	plastid	22.96	20.9
CDY08487	Canola	plasma membrane	20.74	20.14
CDY01068	Canola	plasma membrane	20.74	20.05

Protein Annotations

EnsemblPlants:CDY44419	EnsemblPlantsGene:GSBRNA2T00080104001	GO:A0A078I4F4	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:AA_transpt_TM	PANTHER:PTHR22950	PANTHER:PTHR22950:SF280	PFAM:PF01490	ProteinID:CDY44419	ProteinID:CDY44419.1
SEG:seg	TMHMM:TMhelix	UniParc:UPI0002546E5C	UniProt:A0A078I4F4	MapMan:24.2.3.4.7	:

Description

BnaA02g29580DBnaA02g29580D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I4F4]

Coordinates

chrLK032588:+:187666..189751

Molecular Weight (calculated)

44344.2 Da

IEP (calculated)

9.080

GRAVY (calculated)

0.629

Length

405 amino acids

Sequence
(BLAST)

001: MEEDNQEKQL EDGGSSSLFK TCFNALNAFS GIGILSVPYS LARGGWLSLS LLLLLAATAF YTSLLITKCM NADRSIKTYP DIGERAFGKP GRIIVSVFMH
101: LELYLVTTGF LIMEGDNLHN LFPGFNIKMI GLRLNGKQSF MASVALVIMP TLWWDNLSVL SYVSMSGVLA TVLTLGSISW VGAVDGIGFR QSGKLINWSG
201: IPTALSLYAF CYGAHPVLPT LYNSMKSKHQ FNNVLLISFI LCTIGYTSMA VLGYLMYGSN TLSQITLNLP THKTSSKVAI YTTLVNPIAK YALMITPTVN
301: TIKDWFPSRY AKKTYLHLLI STLCIASSVV IAETFPFFGY MMSLVGALLS VTVSILLPCL CYLKISGSFK KFGFETIMLF GMVAMCVPIG VLGTYIAIRE
401: LVISV

Best Arabidopsis Sequence Match ( AT3G28960.1 )
(BLAST)

001: MEEDNQEIQR DNVGSSSFFK TCFNALNALS GIGILSVPYS LARGGWLSLS LLLLLAVTAF YTSLLITKCM NADRNIKTYP DIGERAFGRP GRIIVSVFMH
101: LELYLVTTGF LILEGDNLHN LFPGFTIEMI GLRLNGKQAF MATVAFVIMP TLWWDNLSVL SYVSMSGVLA TTVTLGSISW IGAFDGIGFH QKGKLINWSG
201: IPTALSLYAF CYGAHPVLPT LYSSMKSKHQ FNNVLLICFI LCTIGYTSMA VLGYLMYGSQ TLSQITLNLP IHKTSSKVAI YTTLVNPVAK YALMITPTVN
301: TIKDWFPSRY SKKAYLHLLI STFFIISSVV IAETLPFFGY MMSLVGALLS VTVSILLPCL CYLKIFGNYK KIGCETIMLF GMVVMSVFVG VIGTYIALRD
401: IIGSV

Arabidopsis Description

AVT1IAmino acid transporter AVT1I [Source:UniProtKB/Swiss-Prot;Acc:F4J1Q9]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.