CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
cytosol 1
mitochondrion 1
plasma membrane 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, nucleus, plasma membrane
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY40336	Canola	plasma membrane	97.8	97.62
AT5G02180.1	Thale cress	plasma membrane	86.63	86.0
CDY55126	Canola	plasma membrane	61.9	65.76
CDY07919	Canola	cytosol, nucleus, plasma membrane	63.19	65.34
CDX73974	Canola	cytosol, nucleus, plasma membrane	48.53	64.79
CDX73972	Canola	extracellular, plastid	15.2	63.36
CDX80808	Canola	plasma membrane	28.02	60.47
CDY55127	Canola	cytosol, plasma membrane, plastid	62.64	58.56
CDX80809	Canola	plasma membrane	62.45	57.5
HORVU2Hr1G075350.2	Barley	endoplasmic reticulum, plasma membrane, vacuole	17.4	55.23
HORVU4Hr1G022660.1	Barley	extracellular	20.88	51.58
Solyc10g084830.1.1	Tomato	cytosol, peroxisome, plasma membrane	47.99	49.53
PGSC0003DMT400028760	Potato	cytosol, peroxisome, plasma membrane	47.8	49.34
CDY18351	Canola	plastid	44.87	48.13
GSMUA_Achr6P34060_001	Banana	plasma membrane	47.99	47.46
CDX78269	Canola	plasma membrane	45.97	47.36
CDX73443	Canola	cytosol, nucleus, plasma membrane	45.97	46.74
CDY44630	Canola	plasma membrane	46.89	46.63
CDX74865	Canola	plasma membrane	46.89	46.38
CDX93284	Canola	cytosol, nucleus, plasma membrane	45.79	45.79
CDY22507	Canola	plasma membrane	41.03	43.08
CDY35425	Canola	plasma membrane	40.66	42.69
CDX79951	Canola	cytosol, nucleus, plasma membrane	41.21	42.53
CDY23868	Canola	cytosol, nucleus, plasma membrane	41.03	42.34
EES17245	Sorghum	cytosol, peroxisome, plasma membrane	44.51	42.19
CDY06942	Canola	cytosol, peroxisome, plasma membrane	40.11	41.01
CDY67831	Canola	cytosol, peroxisome, plasma membrane	39.93	40.9
HORVU5Hr1G020560.3	Barley	plasma membrane	43.77	40.37
Zm00001d032325_P001	Maize	mitochondrion, plasma membrane, vacuole	19.96	40.37
TraesCS5D01G091100.1	Wheat	plasma membrane	43.77	40.1
TraesCS5A01G081500.1	Wheat	plasma membrane	43.59	39.87
TraesCS5B01G084900.1	Wheat	plasma membrane	43.59	39.73
Os12t0574000-01	Rice	plasma membrane	43.22	39.73
Zm00001d041534_P002	Maize	plasma membrane	43.77	39.24
CDX91000	Canola	plasma membrane	30.04	38.14
CDX85556	Canola	plasma membrane	29.67	37.76
Zm00001d030751_P001	Maize	plasma membrane	43.22	37.34
CDY44419	Canola	plasma membrane	27.47	37.04
CDX86397	Canola	plasma membrane	27.11	36.54
CDX85233	Canola	plasma membrane	26.92	36.3
Zm00001d031629_P001	Maize	cytosol, plasma membrane, vacuole	11.54	35.0
CDY38090	Canola	plasma membrane	25.09	31.64
CDY04048	Canola	plasma membrane	27.47	25.86
CDY21456	Canola	plasma membrane	17.77	24.07
CDY70145	Canola	plasma membrane	17.77	24.07
CDX85489	Canola	vacuole	18.68	23.61
CDY54797	Canola	plastid	19.05	23.37
CDY59097	Canola	plastid	18.86	23.25
CDX73848	Canola	plasma membrane	17.77	22.77
CDY53922	Canola	plasma membrane	17.77	22.77
CDY42861	Canola	peroxisome	17.4	22.2
CDY01068	Canola	plasma membrane	17.03	22.2
CDY08487	Canola	plasma membrane	16.67	21.82
CDY47026	Canola	peroxisome, plastid	17.22	21.81

Protein Annotations

EnsemblPlants:CDY10463	EnsemblPlantsGene:GSBRNA2T00032391001	GO:A0A078FEC4	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:AA_transpt_TM	PANTHER:PTHR22950	PANTHER:PTHR22950:SF313	PFAM:PF01490	ProteinID:CDY10463	ProteinID:CDY10463.1
SEG:seg	TMHMM:TMhelix	UniParc:UPI0004EF17F0	UniProt:A0A078FEC4	MapMan:24.2.3.4.7	:

Description

BnaCnng03640DBnaCnng03640D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FEC4]

Coordinates

chrLK032003:-:647286..650185

Molecular Weight (calculated)

59272.7 Da

IEP (calculated)

6.227

GRAVY (calculated)

0.469

Length

546 amino acids

Sequence
(BLAST)

001: MKLDEEFLHD RDHSFLTDDE ENQADLACSD DEHDGDGRRC GANSDTSSPL SRNRSDNNLT DVPPPWPQSY RRSMDLMTGM TPPSVSFMPR SLSRRSGSSF
101: HKKQPSSFFD SFSSSSSKPL LSQPDPDKED TILPPHFLSQ LKLSVTDLPL PQSNLCSVSQ SILNGTNVLC GLGLITMPYA IKESGWLGLI ILSFFGVITC
201: YTGILLKRCL ESSPGLQTYP DIGQAAFGIT GRCIISILLY IELYAACVEY IIMMSDNVSG LFPNVSLSIT PGLSLDSAQT FAVLTTILVL PTVWLKDLSL
301: LSYLSVGGVL ASVLLGLCLF WVGAVDGIGF HATGKLMDFG NLPVAIGIFG FGYSGHSVFP NIYSSMKDPS KFPLVLVICF GFCTVLYTAI AVCGYTMFGE
401: ALQSQFTLNM PKHFLPSKIA VWTAIVTPMT KYALTITPIV LSLEELIPMA KMRSHGVSIL FRTILVISTL VVALSVPFFG IVAALIGSFL AMLVALIFPC
501: LCYLSILKGK LTNTQIGLCM FIIIFGLVSG SCGTYSAISR LAYQMT

Best Arabidopsis Sequence Match ( AT5G02180.1 )
(BLAST)

001: MKLDEEFLHD RDHSFLTDDE ENQAALACSD DEHDGDDDGR RGGENSDSSS PLSRDRSDNN LSDVSNPPWP QSYRQSMDLL TGMTPPSVSF MPQSSSRRLA
101: SSFQKKQQSS FCDSLSSSSS KPLLSQPVPD KEETILPVNP QSQLKLSVTD LPLPEPNLCS FSQSVLNGTN VLCGLGLITM PYAIKESGWL GLPILLFFGV
201: ITCYTGVLMK RCLESSPGIQ TYPDIGQAAF GITGRFIISI LLYVELYAAC VEYIIMMSDN LSGLFPNVSL SIASGISLDS PQIFAILTTL LVLPTVWLKD
301: LSLLSYLSVG GVLASILLGI CLFWVGAVDG IGFHATGRVF DLSNLPVTIG IFGFGYSGHS VFPNIYSSMK DPSRFPLVLV ICFSFCTVLY IAVAVCGYTM
401: FGEAVESQFT LNMPKHFFPS KVAVWTAVIT PMTKYALTIT PIVMSLEELI PTAKMRSRGV SILFRTMLVT STLVVALSVP FFAIVAALIG SFLAMLVALI
501: FPCLCYLSIL KGKLSNTQIG LCIFIIVFGV VSGCCGTYSA ISRLANQMTD

Arabidopsis Description

AVT1DAmino acid transporter AVT1D [Source:UniProtKB/Swiss-Prot;Acc:Q8GYS4]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.