Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 2
- plasma membrane 4
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU2Hr1G075350.2 | Barley | endoplasmic reticulum, plasma membrane, vacuole | 28.06 | 41.28 |
| CDX73972 | Canola | extracellular, plastid | 20.95 | 40.46 |
| HORVU4Hr1G022660.1 | Barley | extracellular | 33.99 | 38.91 |
| CDY55126 | Canola | plasma membrane | 75.49 | 37.16 |
| AT5G02170.1 | Thale cress | plasma membrane | 76.28 | 36.69 |
| CDY55127 | Canola | cytosol, plasma membrane, plastid | 69.96 | 30.31 |
| CDX80809 | Canola | plasma membrane | 70.36 | 30.02 |
| CDY07919 | Canola | cytosol, nucleus, plasma membrane | 61.66 | 29.55 |
| CDY40336 | Canola | plasma membrane | 61.66 | 28.52 |
| CDY10463 | Canola | plasma membrane | 60.47 | 28.02 |
| CDX73974 | Canola | cytosol, nucleus, plasma membrane | 41.9 | 25.92 |
| Solyc10g084830.1.1 | Tomato | cytosol, peroxisome, plasma membrane | 43.87 | 20.98 |
| GSMUA_Achr6P34060_001 | Banana | plasma membrane | 44.66 | 20.47 |
| PGSC0003DMT400028760 | Potato | cytosol, peroxisome, plasma membrane | 42.69 | 20.42 |
| CDX86397 | Canola | plasma membrane | 32.41 | 20.25 |
| CDY18351 | Canola | plastid | 40.71 | 20.24 |
| CDY44419 | Canola | plasma membrane | 32.02 | 20.0 |
| CDX85233 | Canola | plasma membrane | 32.02 | 20.0 |
| CDX74865 | Canola | plasma membrane | 43.08 | 19.75 |
| CDY44630 | Canola | plasma membrane | 42.69 | 19.67 |
| CDX78269 | Canola | plasma membrane | 41.11 | 19.62 |
| CDX73443 | Canola | cytosol, nucleus, plasma membrane | 41.11 | 19.37 |
| CDX91000 | Canola | plasma membrane | 32.41 | 19.07 |
| EES17245 | Sorghum | cytosol, peroxisome, plasma membrane | 43.08 | 18.92 |
| CDY23868 | Canola | cytosol, nucleus, plasma membrane | 39.13 | 18.71 |
| CDX79951 | Canola | cytosol, nucleus, plasma membrane | 39.13 | 18.71 |
| CDX93284 | Canola | cytosol, nucleus, plasma membrane | 40.32 | 18.68 |
| CDX85556 | Canola | plasma membrane | 31.62 | 18.65 |
| HORVU5Hr1G020560.3 | Barley | plasma membrane | 43.48 | 18.58 |
| CDY22507 | Canola | plasma membrane | 37.94 | 18.46 |
| CDY35425 | Canola | plasma membrane | 37.55 | 18.27 |
| TraesCS5B01G084900.1 | Wheat | plasma membrane | 43.08 | 18.2 |
| CDY06942 | Canola | cytosol, peroxisome, plasma membrane | 37.94 | 17.98 |
| TraesCS5D01G091100.1 | Wheat | plasma membrane | 42.29 | 17.95 |
| TraesCS5A01G081500.1 | Wheat | plasma membrane | 42.29 | 17.92 |
| Zm00001d031629_P001 | Maize | cytosol, plasma membrane, vacuole | 12.65 | 17.78 |
| CDY67831 | Canola | cytosol, peroxisome, plasma membrane | 36.76 | 17.45 |
| Zm00001d032325_P001 | Maize | mitochondrion, plasma membrane, vacuole | 18.58 | 17.41 |
| Zm00001d030751_P001 | Maize | plasma membrane | 42.29 | 16.93 |
| Os12t0574000-01 | Rice | plasma membrane | 39.53 | 16.84 |
| Zm00001d041534_P002 | Maize | plasma membrane | 40.32 | 16.75 |
| CDY38090 | Canola | plasma membrane | 28.06 | 16.4 |
| CDX85489 | Canola | vacuole | 24.51 | 14.35 |
| CDY04048 | Canola | plasma membrane | 32.41 | 14.14 |
| CDY70145 | Canola | plasma membrane | 18.97 | 11.91 |
| CDY21456 | Canola | plasma membrane | 18.97 | 11.91 |
| CDX73848 | Canola | plasma membrane | 19.76 | 11.74 |
| CDY53922 | Canola | plasma membrane | 19.76 | 11.74 |
| CDY08487 | Canola | plasma membrane | 18.97 | 11.51 |
| CDY01068 | Canola | plasma membrane | 18.97 | 11.46 |
| CDY59097 | Canola | plastid | 19.37 | 11.06 |
| CDY54797 | Canola | plastid | 18.97 | 10.79 |
| CDY42861 | Canola | peroxisome | 17.39 | 10.28 |
| CDY47026 | Canola | peroxisome, plastid | 17.39 | 10.21 |
Protein Annotations
| EnsemblPlants:CDX80808 | EnsemblPlantsGene:GSBRNA2T00134196001 | GO:A0A078D0B7 | InterPro:AA_transpt_TM | PANTHER:PTHR22950 | PANTHER:PTHR22950:SF313 |
| PFAM:PF01490 | ProteinID:CDX80808 | ProteinID:CDX80808.1 | SEG:seg | TMHMM:TMhelix | UniParc:UPI0004EF1453 |
| MapMan:35.1 | : | : | : | : | : |
Description
BnaC03g00620D
Coordinates
chrLK031823:+:311813..313209
Molecular Weight (calculated)
27436.2 Da
IEP (calculated)
9.635
GRAVY (calculated)
0.800
Length
253 amino acids
Sequence
(BLAST)
(BLAST)
001: MFPNTSLYIS GLSLDSKQVF AITTTLIVLP TVWLRDLSLL SYLSAGGVFS SILLALCLFW AGSVGRVGFH LSGKALDLTN LPVAIEIYGF DFGSHSVFPN
101: IYSSMKGPSK FPLVLLISFA FCTLFYIAVA VCGYTIMDSG RYANEEIRFN HHSSRAKPRI THTILVKIKM RSKGVSMLFR SVLVLSTLVV ALTVPFFATV
201: AALIFHRNAY SVNIPGRLSN SQIGICIFIV IIGVVSGCCG TCSAIARLIG EMA
101: IYSSMKGPSK FPLVLLISFA FCTLFYIAVA VCGYTIMDSG RYANEEIRFN HHSSRAKPRI THTILVKIKM RSKGVSMLFR SVLVLSTLVV ALTVPFFATV
201: AALIFHRNAY SVNIPGRLSN SQIGICIFIV IIGVVSGCCG TCSAIARLIG EMA
001: MELEEQERDI LFPTDDEECQ VDVSCDDEDD DSSSYSSLSQ NDSAPWPRSY RQSVDILTGV TPPTISFIHR RSSQTSFTSS VASLYKRRPT SIANSFASST
101: SKQPLLSEKD DVLFLSSQIG LSNTDLSYGE PNFCSFPQSV LNGINVLCGI SLLTMPYAVK EGGWLGLCIL LSFAIITCYT GILLKRCLES SSDLRTYPDI
201: GQAAFGFTGR LIISILLYME LYVCCVEYII MMSDNLSRVF PNITLNIVGV SLDSPQIFAI SATLIVLPTV WLKDLSLLSY LSAGGVFVSI LLALCLFWVG
301: SVDGVGFHTG GKSLDLANLP VAIGIFGFGF SGHAVLPSIY SSMKEPSKFP LVLLISFGFC VFFYIVVAIC GYSMFGEAIQ SQFTLNMPQQ YTASKIAVWT
401: AVVVPMTKYA LALTPIVLGL EELMLPSEKM RSYGVSIFIK TILVLSTLVV ALTFPFFAIM GALMGSFLAM LVDFIFPCLC YLSILKGRLS KTQIGICVFI
501: IISGIVSGCC GTYSAIGRLV GKLD
101: SKQPLLSEKD DVLFLSSQIG LSNTDLSYGE PNFCSFPQSV LNGINVLCGI SLLTMPYAVK EGGWLGLCIL LSFAIITCYT GILLKRCLES SSDLRTYPDI
201: GQAAFGFTGR LIISILLYME LYVCCVEYII MMSDNLSRVF PNITLNIVGV SLDSPQIFAI SATLIVLPTV WLKDLSLLSY LSAGGVFVSI LLALCLFWVG
301: SVDGVGFHTG GKSLDLANLP VAIGIFGFGF SGHAVLPSIY SSMKEPSKFP LVLLISFGFC VFFYIVVAIC GYSMFGEAIQ SQFTLNMPQQ YTASKIAVWT
401: AVVVPMTKYA LALTPIVLGL EELMLPSEKM RSYGVSIFIK TILVLSTLVV ALTFPFFAIM GALMGSFLAM LVDFIFPCLC YLSILKGRLS KTQIGICVFI
501: IISGIVSGCC GTYSAIGRLV GKLD
Arabidopsis Description
AVT1GAmino acid transporter AVT1G [Source:UniProtKB/Swiss-Prot;Acc:Q1PER9]
SUBAcon: [plasma membrane,nucleus,cytosol]
SUBAcon: [plasma membrane,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.