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Potato
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Potato
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane, plastid

Predictor Summary:
  • plastid 3
  • plasma membrane 3
  • golgi 2
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane, plastid
Any Predictor:plastid, secretory
BaCelLo:plastid
ChloroP:plastid
MultiLoc:plasma membrane
Plant-mPloc:golgi
PProwler:secretory
WoLF PSORT:plastid
YLoc:plasma membrane
PPI

Inferred distinct locusB in Crop

locusBlocations
PGSC0003DMT400084737

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT5G65990.1 PGSC0003DMT400084737 AT1G27300.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400048045 Potato plasma membrane 80.28 79.16
PGSC0003DMT400086252 Potato plasma membrane 79.1 78.35
VIT_07s0031g02140.t01 Wine grape plasma membrane 74.35 74.17
PGSC0003DMT400094217 Potato plasma membrane 71.5 71.33
Bra029326.1-P Field mustard peroxisome 65.8 64.72
CDY42861 Canola peroxisome 65.8 64.72
AT5G65990.1 Thale cress endoplasmic reticulum, peroxisome, plasma membrane, plastid 65.32 64.4
CDY47026 Canola peroxisome, plastid 65.32 63.81
TraesCS6B01G271500.1 Wheat plasma membrane 62.47 62.47
HORVU6Hr1G064740.1 Barley plasma membrane 62.23 62.23
TraesCS6A01G254100.1 Wheat plasma membrane 62.23 62.23
TraesCS6D01G235500.1 Wheat plasma membrane 62.23 62.23
GSMUA_Achr1P02810_001 Banana cytosol, plasma membrane, vacuole 57.48 61.42
KRH28932 Soybean cytosol, plasma membrane 52.26 61.11
EES07473 Sorghum plasma membrane 61.52 60.8
TraesCS2B01G421800.1 Wheat plasma membrane 61.05 60.76
TraesCS2D01G400900.1 Wheat plasma membrane 61.05 60.76
TraesCS2A01G403800.1 Wheat endoplasmic reticulum, plasma membrane, plastid, vacuole 60.81 60.52
Os04t0565500-01 Rice cytosol, plasma membrane, plastid 61.05 60.47
Zm00001d017557_P001 Maize plastid 61.52 59.95
KRH39423 Soybean plasma membrane 60.81 59.81
GSMUA_Achr5P11060_001 Banana plasma membrane 55.11 58.59
GSMUA_Achr4P25490_001 Banana plasma membrane 54.39 58.42
GSMUA_AchrUn_... Banana plasma membrane, plastid, vacuole 57.24 57.66
PGSC0003DMT400033422 Potato plasma membrane 59.14 57.64
OQU82139 Sorghum peroxisome 57.72 56.64
Os02t0670900-02 Rice endoplasmic reticulum, plasma membrane, plastid 62.95 54.41
EES12671 Sorghum plastid 61.28 52.02
Zm00001d026121_P001 Maize cytosol, peroxisome, plasma membrane, plastid 60.57 51.52
PGSC0003DMT400076795 Potato plasma membrane 19.24 24.11
PGSC0003DMT400008751 Potato plasma membrane 23.04 22.77
PGSC0003DMT400019843 Potato peroxisome, plasma membrane, plastid, vacuole 7.84 22.0
PGSC0003DMT400076791 Potato plasma membrane 21.62 21.67
PGSC0003DMT400055694 Potato extracellular, plasma membrane 18.29 20.87
PGSC0003DMT400082135 Potato plasma membrane 4.75 19.61
PGSC0003DMT400080507 Potato peroxisome 23.04 18.55
PGSC0003DMT400028760 Potato cytosol, peroxisome, plasma membrane 22.33 17.77
PGSC0003DMT400036273 Potato cytosol, nucleus, plasma membrane 17.34 16.44
PGSC0003DMT400019190 Potato cytosol, nucleus, plasma membrane 21.14 14.78
Protein Annotations
EnsemblPlants:PGSC0003DMT400045065EnsemblPlantsGene:PGSC0003DMG400017473EntrezGene:102583247EntrezGene:102589712GO:GO:0005575GO:GO:0016020
GO:GO:0016021InterPro:AA_transpt_TMPANTHER:PTHR22950PANTHER:PTHR22950:SF464PFAM:PF01490PGSC:PGSC0003DMG400017473
RefSeq:XP_006339998.1SEG:segTMHMM:TMhelixUniParc:UPI00029520B8UniProt:M1BH15MapMan:24.2.3.4.4
Description
Amino acid transporter [Source:PGSC_GENE;Acc:PGSC0003DMG400017473]
Coordinates
chr2:+:19130563..19132621
Molecular Weight (calculated)
46263.8 Da
IEP (calculated)
8.668
GRAVY (calculated)
0.727
Length
421 amino acids
Sequence
(BLAST)
001: MGFGKNRASS SSHVLRIPRE DTPLLANTQH LSSSSKTFAN VFIAVVGAGV LGLPYSFKKT GWVMGSLMLL SVSSLTYYCM MLLIYSRRKL ESHYKVIKIS
101: SFGDLGYAVC GSIGRCTVDA MIVLSQAGFC ISYLIFIANT LAHLFNYSNP KILGLSPKKV YIWSCFPFQL GLNSIPTLTH LAPLSIFADV VDLGAMGVVM
201: VEDVLIFLKN RPVLEAFGGF SVFFYGLGVS IYAFEGVGMV LPLEAEMKDK DKFGKILGLS MVFISLMYGS FGVLGYFAFG EETKDIITTN LGRGLLSTLV
301: QIGLCINLFL SFPLMMNPVY EVMERRFCEG RYSLWLRWIM VLAVTLVAFK VPNFADFLSL VGSSVCIVLG IVLPAMFHLI VFNKELSWHG LAFDAALVLM
401: GAVLSVYGTY SSMLEIFGVK A
Best Arabidopsis Sequence Match ( AT4G38250.1 )
(BLAST)
001: MGFQNEASSS SYTLKIPPPA REDSPLLGKG PPLSSQFKTF ANVFIAVVGA GVLGLPYAFK RTGWLMGVLL LVSVSVLTHH CMMLLVYTRR KLDSFNAGIS
101: KIGSFGDLGF AVCGSLGRIV VDLFIILSQA GFCVGYLIFI GTTLANLSDP ESPTSLRHQF TRLGSEFLGV SSKSLYIWGC FPFQLGLNSI KTLTHLAPLS
201: IFADIVDLGA MAVVIVEDSM IILKQRPDVV AFGGMSLFLY GMGVAVYSFE GVGMVLPLES EMKDKDKFGK VLALGMGFIS LIYIAFGILG YLAFGEDTMD
301: IITANLGAGL VSTVVQLGLC INLFFTFPLM MNPVFEIVER RFSRGMYSAW LRWVLVLAVT LVALFVPNFA DFLSLVGSST CCVLGFVLPA LFHLLVFKEE
401: MGWLQWSSDT AIVVLGVVLA VSGTWSSLSE IFSVKV
Arabidopsis Description
AVT3CAmino acid transporter AVT3C [Source:UniProtKB/Swiss-Prot;Acc:Q9SVG0]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.