Factsheet for TraesCS2A01G052500.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

cytosol 1
mitochondrion 1
plasma membrane 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, plasma membrane
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2B01G065200.1	Wheat	cytosol, peroxisome, plasma membrane	97.11	96.59
TraesCSU01G023100.1	Wheat	cytosol, peroxisome, plasma membrane	97.11	96.59
HORVU2Hr1G008090.4	Barley	cytosol, peroxisome, plasma membrane	95.67	94.31
Zm00001d004340_P002	Maize	plasma membrane	82.31	80.0
Os04t0201800-00	Rice	plasma membrane, plastid	55.23	76.12
TraesCS6A01G002400.1	Wheat	cytosol, nucleus, plasma membrane	71.12	69.61
KXG25873	Sorghum	plasma membrane	81.95	69.0
Solyc03g063030.2.1	Tomato	plasma membrane	28.52	67.23
Bra007103.1-P	Field mustard	plasma membrane	45.13	63.45
GSMUA_Achr1P03170_001	Banana	cytosol, nucleus, plasma membrane	60.29	59.33
VIT_13s0019g04660.t01	Wine grape	cytosol, nucleus, plasma membrane	59.93	58.97
CDY18351	Canola	plastid	53.97	58.74
CDY44630	Canola	plasma membrane	57.22	57.74
Solyc11g008440.1.1	Tomato	cytosol, nucleus, plasma membrane	57.76	57.66
GSMUA_Achr5P10650_001	Banana	cytosol, nucleus, plasma membrane	57.58	57.58
CDX78269	Canola	plasma membrane	54.69	57.17
Bra005061.1-P	Field mustard	cytosol, nucleus, plasma membrane	47.47	57.05
AT2G39130.2	Thale cress	cytosol, nucleus, plasma membrane	56.32	56.73
CDX74865	Canola	plasma membrane	56.5	56.7
PGSC0003DMT400036273	Potato	cytosol, nucleus, plasma membrane	45.31	56.53
Bra017088.1-P	Field mustard	cytosol, nucleus, plasma membrane	55.6	56.41
CDX73443	Canola	cytosol, nucleus, plasma membrane	54.51	56.24
CDX93284	Canola	cytosol, nucleus, plasma membrane	55.42	56.23
Solyc03g063040.2.1	Tomato	endoplasmic reticulum, plasma membrane, vacuole	11.55	52.03
PGSC0003DMT400019190	Potato	cytosol, nucleus, plasma membrane	55.96	51.49
AT3G54830.1	Thale cress	nucleus	48.92	49.63
TraesCS6A01G348300.2	Wheat	cytosol, plasma membrane, vacuole	37.91	44.03
Solyc03g063050.1.1	Tomato	extracellular, plasma membrane	20.58	42.86
TraesCS2A01G339100.1	Wheat	plasma membrane	32.85	42.82
TraesCS2A01G338800.1	Wheat	plasma membrane	34.48	42.73
TraesCS5A01G081500.1	Wheat	plasma membrane	45.49	42.21
TraesCS6A01G348400.1	Wheat	cytosol, peroxisome, plasma membrane	40.07	41.97
TraesCS7A01G188100.1	Wheat	plasma membrane	30.14	41.85
TraesCS2A01G338600.1	Wheat	plasma membrane	33.03	41.59
TraesCS2A01G282000.1	Wheat	endoplasmic reticulum, plasma membrane, plastid, vacuole	28.7	39.07
TraesCS4A01G018500.1	Wheat	peroxisome, plasma membrane, vacuole	29.42	37.82
TraesCS4A01G018400.1	Wheat	peroxisome, plasma membrane, vacuole	29.24	37.59
TraesCS4A01G018300.1	Wheat	peroxisome, plasma membrane, vacuole	25.45	34.73
KRG99991	Soybean	cytosol, nucleus, peroxisome	17.15	33.33
TraesCS4A01G240700.1	Wheat	endoplasmic reticulum, golgi, plasma membrane	26.53	32.52
TraesCS2A01G279700.1	Wheat	plasma membrane	19.13	25.24
TraesCS6A01G254100.1	Wheat	plasma membrane	19.13	25.18
TraesCS5A01G472600.1	Wheat	plasma membrane	18.95	24.71
TraesCS5A01G472500.1	Wheat	plasma membrane	18.77	24.7
TraesCS5A01G176900.1	Wheat	plasma membrane	18.59	24.47
TraesCS2A01G403800.1	Wheat	endoplasmic reticulum, plasma membrane, plastid, vacuole	18.23	23.88
TraesCS2A01G279600.1	Wheat	plasma membrane	0.72	1.13

Protein Annotations

EnsemblPlants:TraesCS2A01G052500.1	EnsemblPlantsGene:TraesCS2A01G052500	InterPro:AA_transpt_TM	PANTHER:PTHR22950	PANTHER:PTHR22950:SF240	PFAM:PF01490
SEG:seg	TMHMM:TMhelix	MapMan:24.2.3.4.7	:	:	:

Description

No Description!

Coordinates

chr2A:-:20853246..20858380

Molecular Weight (calculated)

59695.6 Da

IEP (calculated)

6.077

GRAVY (calculated)

0.404

Length

554 amino acids

Sequence
(BLAST)

001: MRNSVSDQSF VMESDDEEHR SEEGEEESDG SSSCGSPRVV EAAAGGHPGS YATHQWPQSY RQSMDIYSSV QSPSLSGFLG TPTLSRLSSS FLATSFRGKP
101: PLEIVKPLLP TTLIATEDDH VDDARKSSHQ YLPPSRKASS LFKIPEDQKP LGGGGGHEVG PYRQCSYTQG VMNGVNVLCG VGILSTPYAV RQGGWLGLVI
201: LAVLAVLAWY TGVLLRRCLD SKEGLETYPD IGHAAFGTPG RIVISIILYM ELYACCIEYL ILESDNLSKL FPNAHLTIGG FSLDAHVLFA ILTTLVVMPT
301: TWLHDLSCLS FISAGGVVAS IVIVACLFWA GLVDHVGVNK SEGTALNLPG IPIAIGLYGY CYSGHGVFPN IYSSLKKSNQ FNAVLFTCIA LSTVLFAGAA
401: VMGYIMFGET TESQFTLNMP PNLMSSKIAV WTTVTNPITK YALTMTPLAL SLEELLPPNR QTYGNIIMLR SALVLSSLVV ALSVPFFGLV MSLVGSLLTM
501: FVAYILPCAC FLAILRSTVT WYQIVLCVFI IVVGLCCAGI GTYSSLSKII QNYQ

Best Arabidopsis Sequence Match ( AT2G39130.1 )
(BLAST)

001: MNHVPSDQSF YIESEDEDDR KDYVEEDGGS HSDSSDDVYD ENQAHIKPSS YTTAWPQSYR QSIDLYSSVP SPGIGFLGNN SMTRFGSSFL SSGLIRRHTP
101: ESLPTVTKPL LEEQADEQAL PKHRLSSQGL LSPIPSRRGS MRKDEKSSMV SHEIPMSRNS SYGQAVLNGL NVLCGVGILS TPYAAKEGGW LGLMILFVYG
201: LLSFYTGILL RYCLDSESDL ETYPDIGQAA FGTTGRIFVS IVLYLELYAC CVEYIILESD NLSSLYPNAA LSIGGFQLDA RHLFALLTTL AVLPTVWLRD
301: LSVLSYISAG GVIASVLVVL CLFWIGLVDE VGIHSKGTTL NLSTLPVAIG LYGYCYSGHA VFPNIYTSMA KPSQYPAVLL TCFGICTLMY AGVAVMGYTM
401: FGESTQSQFT LNLPQDLIAT KIAVWTTVVN PFTKYALTIS PVAMSLEELI PSRHIRSHWY AIGIRTLLVF STLLVGLAIP FFGLVMSLIG SLLTMLVTLI
501: LPPACFLSIV RRKVTPTQMM LCVLIIIVGA ISSVIGSYSA LSKIVEKLTN

Arabidopsis Description

AVT1CAmino acid transporter AVT1C [Source:UniProtKB/Swiss-Prot;Acc:F4IUW3]
SUBAcon: [plasma membrane,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.