Factsheet for TraesCS4A01G240700.1

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, golgi, plasma membrane

Predictor Summary:

golgi 1
mitochondrion 1
endoplasmic reticulum 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, golgi, plasma membrane
Any Predictor:	endoplasmic reticulum, golgi, mitochondrion, plasma membrane
MultiLoc:	golgi
PProwler:	mitochondrion
WoLF PSORT:	endoplasmic reticulum
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU4Hr1G012350.1	Barley	endoplasmic reticulum, plasma membrane	83.85	94.75
TraesCS4D01G072600.1	Wheat	mitochondrion, plasma membrane	94.25	91.22
TraesCS4B01G074300.1	Wheat	plasma membrane	93.58	89.43
Os11t0298000-00	Rice	mitochondrion, plastid	77.43	72.46
Zm00001d004633_P001	Maize	plasma membrane	73.23	71.34
GSMUA_Achr6P06880_001	Banana	mitochondrion, plasma membrane, plastid	68.14	65.12
VIT_05s0062g01150.t01	Wine grape	plasma membrane	61.06	63.59
PGSC0003DMT400055694	Potato	extracellular, plasma membrane	50.22	61.52
Solyc09g098380.1.1	Tomato	plasma membrane	57.3	58.6
CDY38090	Canola	plasma membrane	55.97	58.43
AT5G16740.1	Thale cress	plasma membrane	54.87	58.22
KRH58803	Soybean	mitochondrion	56.64	55.65
Bra023581.1-P	Field mustard	plasma membrane	38.5	55.24
KRG97383	Soybean	mitochondrion	56.42	54.03
KRH31531	Soybean	mitochondrion	51.77	51.77
CDX85489	Canola	vacuole	42.48	44.44
TraesCS7A01G188100.1	Wheat	plasma membrane	30.97	35.09
TraesCS2A01G338600.1	Wheat	plasma membrane	32.52	33.41
TraesCS2A01G339100.1	Wheat	plasma membrane	30.75	32.71
TraesCS2A01G282000.1	Wheat	endoplasmic reticulum, plasma membrane, plastid, vacuole	28.32	31.45
TraesCS2A01G338800.1	Wheat	plasma membrane	30.97	31.32
TraesCS4A01G018400.1	Wheat	peroxisome, plasma membrane, vacuole	29.65	31.09
TraesCS4A01G018500.1	Wheat	peroxisome, plasma membrane, vacuole	28.76	30.16
TraesCS4A01G018300.1	Wheat	peroxisome, plasma membrane, vacuole	26.55	29.56
TraesCS6A01G348300.2	Wheat	cytosol, plasma membrane, vacuole	30.31	28.72
TraesCS2A01G052500.1	Wheat	plasma membrane	32.52	26.53
TraesCS6A01G348400.1	Wheat	cytosol, peroxisome, plasma membrane	29.87	25.52
TraesCS6A01G002400.1	Wheat	cytosol, nucleus, plasma membrane	31.64	25.27
TraesCS5A01G081500.1	Wheat	plasma membrane	30.31	22.95
TraesCS5A01G472500.1	Wheat	plasma membrane	19.03	20.43
TraesCS5A01G472600.1	Wheat	plasma membrane	19.03	20.24
TraesCS5A01G176900.1	Wheat	plasma membrane	18.58	19.95
TraesCS6A01G254100.1	Wheat	plasma membrane	18.58	19.95
TraesCS2A01G279700.1	Wheat	plasma membrane	17.92	19.29
TraesCS2A01G403800.1	Wheat	endoplasmic reticulum, plasma membrane, plastid, vacuole	17.48	18.68
TraesCS2A01G279600.1	Wheat	plasma membrane	0.22	0.28

Protein Annotations

EnsemblPlants:TraesCS4A01G240700.1	EnsemblPlantsGene:TraesCS4A01G240700	InterPro:AA_transpt_TM	PANTHER:PTHR22950	PANTHER:PTHR22950:SF219	PFAM:PF01490
SEG:seg	TMHMM:TMhelix	MapMan:24.2.3.4.7	:	:	:

Description

No Description!

Coordinates

chr4A:-:550464945..550467229

Molecular Weight (calculated)

48182.0 Da

IEP (calculated)

9.781

GRAVY (calculated)

0.736

Length

452 amino acids

Sequence
(BLAST)

001: MHGARLAAQQ LSRGRDACDV EAGKPCQEET AAACGGRVAA MASITQQHHS KPTSTFAQSV INMVGMLIGL GQLSTPYALE NGGWASIFLL VGLGIMCAYT
101: AHIIGKCLDE EPRSKTYQDI GQQAFGSKGR LIASAFIYLE IFFALVSYTI SLSDNIPLVF AGVRLHLPIP WLRLSTTQLL TVIAVLVALP SLWLRNLSSI
201: SCLSFAGILM SMVIFVTILC TAAFGSVGLG KHIPVLRLDK IPTVSGLYMF SYAGHIVFPN IYTAMKDPSS FTKVSVTSFS MVALLYTALA FVGASLFGPS
301: VNSQVTLSMP PGLLVTKVAL WATVLTPVTK YALEFAPFAI QLEHHLPATM GPRARIIIRG SIGSAGLLII LALALSVPYF QYVLSLTGSL ISVAISVIFP
401: CAFYVKIRWG RLSRHVVVLN AAMIAVGFVL AVVGTASSAK LLVKSIQNGH VA

Best Arabidopsis Sequence Match ( AT5G16740.1 )
(BLAST)

001: MVCVACVEEN KGCECEHEKP VRELVLEAAS ENSSFLHSVI NMVGMLIGLG QLSMPYAVES GGWMSIFLLI SFGILTTYTS HILGKCIRRN PKSKSYSDIG
101: YSAFGRHGRL IVCLFIYLEI FMALVSYTIS LHDNISAAFP ATFSNHGHFP AAKLTAVAVA IALPSLWIRD LSSISFLSSG GILMSAIIFG SVVYTAIFGG
201: VIDDGKIPVL RLENIPTVSG IYLFSFGGHI VFPNLYTSMK DPSKFTKVSI VSFATVTALY GALAITGAKM FGPSVNSQIT LSLPKHLVVT KIALWATVLT
301: PMTKYALEFA PLAIQLERSL PSTMTDRTKL VARGLMGSAL LLVILALALT VPYFGYVLSL TGSLVSVTIA VTLPSAFYLK ICWDGMTKFT RAANLGFVVL
401: GCVLGVLGSF ESSKLLVKEL VRVHGG

Arabidopsis Description

AVT1HAmino acid transporter AVT1H [Source:UniProtKB/Swiss-Prot;Acc:Q9LFE3]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.