Factsheet for GSMUA_Achr6P06880_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plasma membrane, plastid

Predictor Summary:

nucleus 1
mitochondrion 2
golgi 1
plastid 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU4Hr1G012350.1	Barley	endoplasmic reticulum, plasma membrane	61.31	72.5
VIT_05s0062g01150.t01	Wine grape	plasma membrane	65.12	70.97
Zm00001d004633_P001	Maize	plasma membrane	68.29	69.61
TraesCS4A01G240700.1	Wheat	endoplasmic reticulum, golgi, plasma membrane	65.12	68.14
PGSC0003DMT400055694	Potato	extracellular, plasma membrane	52.64	67.48
TraesCS4D01G072600.1	Wheat	mitochondrion, plasma membrane	66.6	67.45
Os11t0298000-00	Rice	mitochondrion, plastid	68.5	67.08
KRH58803	Soybean	mitochondrion	62.58	64.35
TraesCS4B01G074300.1	Wheat	plasma membrane	64.27	64.27
Solyc09g098380.1.1	Tomato	plasma membrane	60.04	64.25
AT5G16740.1	Thale cress	plasma membrane	53.91	59.86
CDY38090	Canola	plasma membrane	54.33	59.35
KRG97383	Soybean	mitochondrion	59.2	59.32
KRH31531	Soybean	mitochondrion	54.33	56.86
Bra023581.1-P	Field mustard	plasma membrane	36.58	54.92
CDX85489	Canola	vacuole	41.23	45.14
GSMUA_Achr7P18140_001	Banana	plasma membrane	29.81	33.18
GSMUA_Achr10P...	Banana	plasma membrane	28.96	31.14
GSMUA_Achr6P35440_001	Banana	plasma membrane	27.7	30.11
GSMUA_Achr6P34060_001	Banana	plasma membrane	31.5	26.99
GSMUA_Achr5P10650_001	Banana	cytosol, nucleus, plasma membrane	31.5	26.9
GSMUA_Achr11P...	Banana	cytosol, peroxisome, plasma membrane	30.23	26.48
GSMUA_Achr1P03170_001	Banana	cytosol, nucleus, plasma membrane	28.75	24.16
GSMUA_Achr1P02810_001	Banana	cytosol, plasma membrane, vacuole	16.49	19.8
GSMUA_Achr5P11060_001	Banana	plasma membrane	15.22	18.18
GSMUA_Achr4P25490_001	Banana	plasma membrane	14.16	17.09
GSMUA_Achr1P27880_001	Banana	nucleus, peroxisome, plasma membrane	12.26	16.62
GSMUA_AchrUn_...	Banana	plasma membrane, plastid, vacuole	14.59	16.51

Protein Annotations

EnsemblPlants:GSMUA_Achr6P06880_001	EnsemblPlants:GSMUA_Achr6T06880_001	EnsemblPlantsGene:GSMUA_Achr6G06880_001	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:AA_transpt_TM	PANTHER:PTHR22950	PANTHER:PTHR22950:SF219	PFAM:PF01490	SEG:seg	TMHMM:TMhelix
UniParc:UPI000294A7BD	UniProt:M0T4T7	MapMan:24.2.3.4.7	:	:	:

Description

transmembrane amino acid transporter protein, putative [Source:GMGC_GENE;Acc:GSMUA_Achr6G06880_001]

Coordinates

chr6:-:4672034..4673608

Molecular Weight (calculated)

50618.6 Da

IEP (calculated)

9.207

GRAVY (calculated)

0.629

Length

473 amino acids

Sequence
(BLAST)

001: MSDFSATKFG RCWSSLEFGK QPQRNQVVSE TVHGAQLAAA AQSANCVTCV EGNKVCKCGK DTEVLNLQSE HHAKATSSFT HSVINMIGML IGLGQLSTPY
101: ALENGGWSSV FLLVGLGVMC AYTSHIIGKC LEEDSSSKTY QDIGQQAFGA KGRIIASTLI YLEIFFALVS YTISLSDNLP LVLSGVHAHI SWLPLSASQL
201: LTVVAVLVAL PTLWLRDLSS ISFLSFGGIV MSLLIFVTIA CTAAFGGVRG NHSIPLLQLR KIPGISGLYI FSYAGHIVFP NIYTAMKDPS KFTKVSIASF
301: TTVTMLYTAL AFMGAKLFGP AVSSQITLSM PPHLIATKIA LWATVLTPMT KYALEFSPFA SQLEHKLPST MSSRARMVIR GSVGSILLLV ILALALSLPY
401: FEHVLSLTGS LVSIAISLIF PCAFYLKICW PQVSKPTVVL NGVLIVLGAL LGVVGTISSS KALIQSIQRG HSL

Best Arabidopsis Sequence Match ( AT5G16740.1 )
(BLAST)

001: MVCVACVEEN KGCECEHEKP VRELVLEAAS ENSSFLHSVI NMVGMLIGLG QLSMPYAVES GGWMSIFLLI SFGILTTYTS HILGKCIRRN PKSKSYSDIG
101: YSAFGRHGRL IVCLFIYLEI FMALVSYTIS LHDNISAAFP ATFSNHGHFP AAKLTAVAVA IALPSLWIRD LSSISFLSSG GILMSAIIFG SVVYTAIFGG
201: VIDDGKIPVL RLENIPTVSG IYLFSFGGHI VFPNLYTSMK DPSKFTKVSI VSFATVTALY GALAITGAKM FGPSVNSQIT LSLPKHLVVT KIALWATVLT
301: PMTKYALEFA PLAIQLERSL PSTMTDRTKL VARGLMGSAL LLVILALALT VPYFGYVLSL TGSLVSVTIA VTLPSAFYLK ICWDGMTKFT RAANLGFVVL
401: GCVLGVLGSF ESSKLLVKEL VRVHGG

Arabidopsis Description

AVT1HAmino acid transporter AVT1H [Source:UniProtKB/Swiss-Prot;Acc:Q9LFE3]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.