Factsheet for TraesCS6D01G003200.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, nucleus, plasma membrane

Predictor Summary:

cytosol 1
mitochondrion 1
plasma membrane 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plasma membrane
Any Predictor:	cytosol, nucleus, plasma membrane
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6A01G002400.1	Wheat	cytosol, nucleus, plasma membrane	98.42	99.12
TraesCS6B01G007400.1	Wheat	cytosol, peroxisome, plasma membrane	95.79	96.98
HORVU6Hr1G001480.1	Barley	plasma membrane	96.14	92.26
Zm00001d044994_P001	Maize	cytosol, plasma membrane, vacuole	22.11	82.35
Os02t0101000-01	Rice	cytosol, nucleus, plasma membrane	81.23	81.09
EER89806	Sorghum	cytosol, nucleus, plasma membrane	78.42	78.28
Zm00001d043640_P001	Maize	plasma membrane	22.11	74.56
Zm00001d037057_P001	Maize	cytosol, nucleus, plasma membrane	63.16	68.44
Solyc03g063030.2.1	Tomato	plasma membrane	27.19	65.96
Bra007103.1-P	Field mustard	plasma membrane	42.46	61.42
GSMUA_Achr1P03170_001	Banana	cytosol, nucleus, plasma membrane	58.42	59.15
GSMUA_Achr5P10650_001	Banana	cytosol, nucleus, plasma membrane	56.67	58.3
VIT_13s0019g04660.t01	Wine grape	cytosol, nucleus, plasma membrane	57.19	57.9
CDY18351	Canola	plastid	51.23	57.37
Solyc11g008440.1.1	Tomato	cytosol, nucleus, plasma membrane	55.79	57.3
AT2G39130.2	Thale cress	cytosol, nucleus, plasma membrane	53.51	55.45
CDX78269	Canola	plasma membrane	51.4	55.28
CDY44630	Canola	plasma membrane	53.16	55.19
PGSC0003DMT400036273	Potato	cytosol, nucleus, plasma membrane	42.98	55.18
Bra005061.1-P	Field mustard	cytosol, nucleus, plasma membrane	44.56	55.1
Bra017088.1-P	Field mustard	cytosol, nucleus, plasma membrane	52.46	54.76
CDX74865	Canola	plasma membrane	52.98	54.71
CDX93284	Canola	cytosol, nucleus, plasma membrane	52.28	54.58
CDX73443	Canola	cytosol, nucleus, plasma membrane	50.7	53.82
Solyc03g063040.2.1	Tomato	endoplasmic reticulum, plasma membrane, vacuole	11.58	53.66
PGSC0003DMT400019190	Potato	cytosol, nucleus, plasma membrane	54.56	51.66
AT3G54830.1	Thale cress	nucleus	47.19	49.27
TraesCS7D01G189100.1	Wheat	plasma membrane	30.7	43.86
TraesCS5D01G091100.1	Wheat	plasma membrane	45.26	43.29
TraesCS6D01G331300.1	Wheat	plasma membrane	38.95	43.11
TraesCS6D01G331400.2	Wheat	cytosol, peroxisome, plasma membrane	40.53	43.02
Solyc03g063050.1.1	Tomato	extracellular, plasma membrane	20.0	42.86
TraesCS2D01G324400.2	Wheat	plasma membrane	32.11	41.59
TraesCS2D01G324000.1	Wheat	endoplasmic reticulum, golgi, plasma membrane	30.88	41.41
TraesCS2D01G280800.1	Wheat	endoplasmic reticulum, plasma membrane, plastid, vacuole	29.12	40.79
TraesCS2D01G324300.1	Wheat	plasma membrane	31.05	39.6
TraesCS4D01G284600.1	Wheat	peroxisome, plasma membrane, vacuole	28.6	37.73
TraesCS4D01G284500.1	Wheat	plasma membrane	22.46	34.78
KRG99991	Soybean	cytosol, nucleus, peroxisome	17.02	34.04
TraesCS4D01G072600.1	Wheat	mitochondrion, plasma membrane	25.96	31.69
TraesCS6D01G235500.1	Wheat	plasma membrane	18.07	24.47
TraesCS5D01G485100.1	Wheat	plasma membrane	17.72	23.99
TraesCS5D01G485300.1	Wheat	plasma membrane	17.72	23.93
TraesCS2D01G400900.1	Wheat	plasma membrane	16.84	22.7
TraesCS2D01G278600.1	Wheat	plasma membrane	16.14	21.9
TraesCS5D01G180000.1	Wheat	plastid	14.39	21.24

Protein Annotations

EnsemblPlants:TraesCS6D01G003200.1	EnsemblPlantsGene:TraesCS6D01G003200	InterPro:AA_transpt_TM	PANTHER:PTHR22950	PANTHER:PTHR22950:SF240	PFAM:PF01490
SEG:seg	TMHMM:TMhelix	MapMan:24.2.3.4.7	:	:	:

Description

No Description!

Coordinates

chr6D:-:1769875..1774534

Molecular Weight (calculated)

61700.6 Da

IEP (calculated)

6.230

GRAVY (calculated)

0.295

Length

570 amino acids

Sequence
(BLAST)

001: MRSLLGEERS FIIESDDDDE EDPAHRGDGV GHGDDGSSSD SSSCATPRGG GGGGGDSQPN SYTNQWPQSY RQSIDILSNV QSPSLGFLGT PTLSRLSNSF
101: LNSSFLNNSF RGKTPEIVSN LVKPLIRPTT SDEQQQQQQQ HEDIRKSSQY LLPSRKPSLQ QIPEDQKPLV VGHEVSPYQQ CSYTQGAMNG INVLCGVGIL
201: STPYAIKQGG WLGLVILVVF ALLAWYTGVL LRRCLDSKEG LQTYPDIGHA AFGTTGRIAI SIILYVELYA CCIEYLILES DNLSKLFPNV HLSIGGLTIN
301: SHVFFAILTT LVVMPTTWLR DLTCLSYISA GGVVASILVV ICLCWIGVVD HVGFENKGTA LNLPGIPIAI GLYGYCYSGH GVFPNIYSSL KNRNQFPSIL
401: FTCIGFSTIL FTAAAVMGYK MFGEATESQF TLNLPENLVV SKIAVWATVA NPITKYALTI TPLAMSLEEL LPRSQQKYSN IILLRSALVV STLIIALSVP
501: FFALVMALIG SLFAMLVTYI LPCACFLAIL KAKATWYQTA TCSFIIAVGV TCACVGTYSS LSGIVQNYAT

Best Arabidopsis Sequence Match ( AT2G39130.1 )
(BLAST)

001: MNHVPSDQSF YIESEDEDDR KDYVEEDGGS HSDSSDDVYD ENQAHIKPSS YTTAWPQSYR QSIDLYSSVP SPGIGFLGNN SMTRFGSSFL SSGLIRRHTP
101: ESLPTVTKPL LEEQADEQAL PKHRLSSQGL LSPIPSRRGS MRKDEKSSMV SHEIPMSRNS SYGQAVLNGL NVLCGVGILS TPYAAKEGGW LGLMILFVYG
201: LLSFYTGILL RYCLDSESDL ETYPDIGQAA FGTTGRIFVS IVLYLELYAC CVEYIILESD NLSSLYPNAA LSIGGFQLDA RHLFALLTTL AVLPTVWLRD
301: LSVLSYISAG GVIASVLVVL CLFWIGLVDE VGIHSKGTTL NLSTLPVAIG LYGYCYSGHA VFPNIYTSMA KPSQYPAVLL TCFGICTLMY AGVAVMGYTM
401: FGESTQSQFT LNLPQDLIAT KIAVWTTVVN PFTKYALTIS PVAMSLEELI PSRHIRSHWY AIGIRTLLVF STLLVGLAIP FFGLVMSLIG SLLTMLVTLI
501: LPPACFLSIV RRKVTPTQMM LCVLIIIVGA ISSVIGSYSA LSKIVEKLTN

Arabidopsis Description

AVT1CAmino acid transporter AVT1C [Source:UniProtKB/Swiss-Prot;Acc:F4IUW3]
SUBAcon: [cytosol,nucleus,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.