Factsheet for TraesCS2D01G280800.1

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, plastid, vacuole, plasma membrane

Predictor Summary:

plastid 1
endoplasmic reticulum 2
extracellular 1
vacuole 2
plasma membrane 2
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, plasma membrane, plastid, vacuole
Any Predictor:	endoplasmic reticulum, plasma membrane, plastid, vacuole
ChloroP:	plastid
MultiLoc:	endoplasmic reticulum
PProwler:	secretory
WoLF PSORT:	vacuole
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G282000.1	Wheat	endoplasmic reticulum, plasma membrane, plastid, vacuole	97.05	97.05
TraesCS2B01G299200.1	Wheat	plasma membrane	94.59	94.59
HORVU2Hr1G069080.4	Barley	cytosol, peroxisome, plasma membrane	91.4	91.4
TraesCS7D01G189100.1	Wheat	plasma membrane	64.62	65.91
Solyc06g061270.1.1	Tomato	cytosol, plasma membrane	27.76	53.81
GSMUA_Achr7P18140_001	Banana	plasma membrane	55.53	53.18
Solyc05g050440.2.1	Tomato	extracellular, plasma membrane, vacuole	22.11	52.63
Solyc05g053970.2.1	Tomato	plasma membrane	45.45	52.56
VIT_01s0026g02500.t01	Wine grape	plasma membrane	53.07	52.55
TraesCS2D01G324000.1	Wheat	endoplasmic reticulum, golgi, plasma membrane	51.35	49.18
KRG89633	Soybean	plasma membrane	48.89	48.89
PGSC0003DMT400019843	Potato	peroxisome, plasma membrane, plastid, vacuole	17.69	48.0
TraesCS2D01G324400.2	Wheat	plasma membrane	50.61	46.82
TraesCS2D01G324300.1	Wheat	plasma membrane	51.35	46.76
Solyc06g061260.1.1	Tomato	plasma membrane	22.11	46.63
TraesCS4D01G284600.1	Wheat	peroxisome, plasma membrane, vacuole	46.93	44.21
TraesCS4D01G284500.1	Wheat	plasma membrane	37.1	41.03
PGSC0003DMT400082135	Potato	plasma membrane	10.07	40.2
TraesCS6D01G331300.1	Wheat	plasma membrane	40.54	32.04
TraesCS6D01G331400.2	Wheat	cytosol, peroxisome, plasma membrane	41.77	31.66
TraesCS6D01G003200.1	Wheat	cytosol, nucleus, plasma membrane	40.79	29.12
TraesCS4D01G072600.1	Wheat	mitochondrion, plasma membrane	31.2	27.19
TraesCS5D01G091100.1	Wheat	plasma membrane	38.57	26.34
TraesCS6D01G235500.1	Wheat	plasma membrane	23.59	22.8
TraesCS5D01G485300.1	Wheat	plasma membrane	23.34	22.51
TraesCS5D01G485100.1	Wheat	plasma membrane	22.6	21.85
TraesCS2D01G278600.1	Wheat	plasma membrane	22.36	21.67
TraesCS5D01G180000.1	Wheat	plastid	20.15	21.24
TraesCS2D01G400900.1	Wheat	plasma membrane	21.87	21.04

Protein Annotations

EnsemblPlants:TraesCS2D01G280800.1	EnsemblPlantsGene:TraesCS2D01G280800	InterPro:AA_transpt_TM	PANTHER:PTHR22950	PANTHER:PTHR22950:SF280	PFAM:PF01490
SEG:seg	TMHMM:TMhelix	MapMan:24.2.3.4.7	:	:	:

Description

No Description!

Coordinates

chr2D:-:352912904..352914566

Molecular Weight (calculated)

42987.8 Da

IEP (calculated)

9.538

GRAVY (calculated)

0.810

Length

407 amino acids

Sequence
(BLAST)

001: MDMSTANTDL PPSSGKTNFL KTCFNGINAL SGVGLLSIPY ALSQGGWLSL IVFMAIAVIC FYTGLLLQRC MDSSSLVNTY PDIGAHAFGR KGRVIVATFM
101: HLELYLVAID FLILEGDNLH KLFPAASFRL GALRVSGKQA FVLAATLAVL PTTWFSSLNV LAYVAAGGAL ASLLLIAAVL WVGVFDGVGF RERGRLVRWD
201: TMPSAMSLYS FCFSGHAVFP MLYTGMKDRK RFPMVLSLCF IVSTLSYGLM GIVGYLMYGD TLKSQITLNL PSASVAAKVA IYTTLVNPLA KYALVVAPVA
301: EAAEGALGVG KSAPLRALVR TVLVVGTAVV ALAVPFFADV VGLTGALLSC TATMLLPCLC YLKVRSKIGG DKGMGLETAA CLAIVAIGTA IVGLGTYSSV
401: KQIVRKL

Best Arabidopsis Sequence Match ( AT3G28960.1 )
(BLAST)

001: MEEDNQEIQR DNVGSSSFFK TCFNALNALS GIGILSVPYS LARGGWLSLS LLLLLAVTAF YTSLLITKCM NADRNIKTYP DIGERAFGRP GRIIVSVFMH
101: LELYLVTTGF LILEGDNLHN LFPGFTIEMI GLRLNGKQAF MATVAFVIMP TLWWDNLSVL SYVSMSGVLA TTVTLGSISW IGAFDGIGFH QKGKLINWSG
201: IPTALSLYAF CYGAHPVLPT LYSSMKSKHQ FNNVLLICFI LCTIGYTSMA VLGYLMYGSQ TLSQITLNLP IHKTSSKVAI YTTLVNPVAK YALMITPTVN
301: TIKDWFPSRY SKKAYLHLLI STFFIISSVV IAETLPFFGY MMSLVGALLS VTVSILLPCL CYLKIFGNYK KIGCETIMLF GMVVMSVFVG VIGTYIALRD
401: IIGSV

Arabidopsis Description

AVT1IAmino acid transporter AVT1I [Source:UniProtKB/Swiss-Prot;Acc:F4J1Q9]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.