Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
- plastid 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| plasma membrane:
27800704
|
msms PMID:
27800704
doi
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os01t0200500-01 | |
| Os02t0509600-01 | |
| Os05t0520100-00 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G40890.1 | Os02t0509600-01 | AT1G27300.1 | 21798944 |
| AT5G40890.1 | Os01t0200500-01 | AT3G16310.1 | 21798944 |
| AT5G40890.1 | Os05t0520100-00 | AT3G16310.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU0Hr1G015220.3 | Barley | cytosol | 77.63 | 28.71 |
| EER90148 | Sorghum | plasma membrane | 80.92 | 15.36 |
| TraesCS6D01G084300.1 | Wheat | cytosol, nucleus, plasma membrane | 76.32 | 14.74 |
| Zm00001d046919_P001 | Maize | plasma membrane | 77.63 | 14.73 |
| TraesCS6A01G098500.2 | Wheat | cytosol, peroxisome, plasma membrane | 76.97 | 14.7 |
| TraesCS6B01G126400.1 | Wheat | plasma membrane | 75.66 | 14.61 |
| TraesCS6A01G098600.1 | Wheat | plasma membrane | 74.34 | 14.52 |
| TraesCS6D01G084000.2 | Wheat | plasma membrane | 73.68 | 14.29 |
| TraesCS6B01G126800.1 | Wheat | plasma membrane | 73.03 | 14.16 |
| VIT_14s0068g02190.t01 | Wine grape | plasma membrane | 56.58 | 10.9 |
| Solyc02g068080.2.1 | Tomato | peroxisome, plasma membrane, vacuole | 54.61 | 10.59 |
| KRH06955 | Soybean | plasma membrane | 51.32 | 10.47 |
| PGSC0003DMT400017962 | Potato | peroxisome, plasma membrane, vacuole | 53.95 | 10.46 |
| KRH57669 | Soybean | plasma membrane | 52.63 | 10.3 |
| CDY11722 | Canola | plasma membrane | 50.66 | 10.0 |
| Bra028478.1-P | Field mustard | plasma membrane | 50.0 | 9.87 |
| CDX67478 | Canola | plasma membrane | 50.0 | 9.87 |
| AT5G40890.1 | Thale cress | plasma membrane | 50.0 | 9.81 |
| KRG94508 | Soybean | plasma membrane | 50.66 | 9.75 |
| Bra025253.1-P | Field mustard | plasma membrane | 49.34 | 9.58 |
| CDY13685 | Canola | plasma membrane | 49.34 | 9.58 |
| CDY15925 | Canola | plasma membrane | 48.68 | 9.54 |
| Bra030328.1-P | Field mustard | plasma membrane | 48.68 | 9.54 |
| CDX83663 | Canola | plasma membrane | 48.68 | 9.45 |
| CDX99630 | Canola | plasma membrane | 48.03 | 9.41 |
| GSMUA_Achr3P16100_001 | Banana | plasma membrane | 44.74 | 9.38 |
| AT3G27170.1 | Thale cress | plasma membrane | 48.03 | 9.36 |
| CDY34173 | Canola | plasma membrane | 48.03 | 9.36 |
| Bra032985.1-P | Field mustard | plasma membrane | 48.03 | 9.32 |
| CDY28488 | Canola | plasma membrane | 48.03 | 9.32 |
| PGSC0003DMT400052072 | Potato | plasma membrane | 43.42 | 8.53 |
| Solyc02g094060.2.1 | Tomato | plasma membrane | 42.76 | 8.52 |
| Os02t0558100-02 | Rice | plasma membrane | 39.47 | 7.46 |
| Os08t0300300-01 | Rice | plasma membrane | 31.58 | 6.03 |
| Os01t0876100-00 | Rice | plasma membrane | 33.55 | 5.85 |
| Os03t0695700-01 | Rice | extracellular, plasma membrane | 0.0 | 0.0 |
| Os03t0695600-01 | Rice | cytosol | 0.0 | 0.0 |
| VIT_00s0316g00020.t01 | Wine grape | cytosol | 0.0 | 0.0 |
| VIT_14s0068g02330.t01 | Wine grape | cytosol, extracellular | 0.0 | 0.0 |
Protein Annotations
| MapMan:35.1 | UniProt:A0A0P0Y9R2 | ProteinID:BAT16975.1 | InterPro:Cl-channel_core | GO:GO:0003674 | GO:GO:0005215 |
| GO:GO:0005247 | GO:GO:0005575 | GO:GO:0006810 | GO:GO:0006811 | GO:GO:0006821 | GO:GO:0008150 |
| GO:GO:0016020 | GO:GO:0016021 | GO:GO:0055085 | GO:GO:1902476 | InterPro:IPR014743 | EnsemblPlantsGene:Os12g0438600 |
| EnsemblPlants:Os12t0438600-01 | PANTHER:PTHR11689 | PANTHER:PTHR11689:SF67 | SUPFAM:SSF81340 | TMHMM:TMhelix | UniParc:UPI0003939673 |
Description
CYSTATHIONINE B-SYNTHASE DOMAIN CONTAINING CHLORIDE CHANNEL PROTEIN 7Similar to chloride channel protein. (Os12t0438600-01)
Coordinates
chr12:-:14487420..14491026
Molecular Weight (calculated)
16678.2 Da
IEP (calculated)
5.636
GRAVY (calculated)
-0.062
Length
152 amino acids
Sequence
(BLAST)
(BLAST)
001: MEEEQSPRLA AGEPERKLED GVTDAEDPGC TGNAAMSSLE QPLLKRSNTL TASHLAMVGA KVSHIESLDY EIIENDLFKH DWRRRSNVEV LQYIFLKWAM
101: AFLVGLLTGV IASLINLAIE NISGLKMLHM VQLVRKKNTG PVSCISPAST SA
101: AFLVGLLTGV IASLINLAIE NISGLKMLHM VQLVRKKNTG PVSCISPAST SA
001: MVEEDLNQIG GNSNYNGEGG DPESNTLNQP LVKANRTLSS TPLALVGAKV SHIESLDYEI NENDLFKHDW RKRSKAQVLQ YVFLKWTLAC LVGLFTGLIA
101: TLINLAVENI AGYKLLAVGH FLTQERYVTG LMVLVGANLG LTLVASVLCV CFAPTAAGPG IPEIKAYLNG VDTPNMFGAT TMIVKIVGSI GAVAAGLDLG
201: KEGPLVHIGS CIASLLGQGG TDNHRIKWRW LRYFNNDRDR RDLITCGSAA GVCAAFRSPV GGVLFALEEV ATWWRSALLW RTFFSTAVVV VVLREFIEIC
301: NSGKCGLFGK GGLIMFDVSH VTYTYHVTDI IPVMLIGVIG GILGSLYNHL LHKVLRLYNL INEKGKIHKV LLSLTVSLFT SVCLYGLPFL AKCKPCDPSI
401: DEICPTNGRS GNFKQFHCPK GYYNDLATLL LTTNDDAVRN LFSSNTPNEF GMGSLWIFFV LYCILGLFTF GIATPSGLFL PIILMGAAYG RMLGAAMGSY
501: TSIDQGLYAV LGAAALMAGS MRMTVSLCVI FLELTNNLLL LPITMIVLLI AKTVGDSFNP SIYDIILHLK GLPFLEANPE PWMRNLTVGE LGDAKPPVVT
601: LQGVEKVSNI VDVLKNTTHN AFPVLDEAEV PQVGLATGAT ELHGLILRAH LVKVLKKRWF LTEKRRTEEW EVREKFPWDE LAEREDNFDD VAITSAEMEM
701: YVDLHPLTNT TPYTVMENMS VAKALVLFRQ VGLRHLLIVP KIQASGMCPV VGILTRQDLR AYNILQAFPL LEKSKGGKTH
101: TLINLAVENI AGYKLLAVGH FLTQERYVTG LMVLVGANLG LTLVASVLCV CFAPTAAGPG IPEIKAYLNG VDTPNMFGAT TMIVKIVGSI GAVAAGLDLG
201: KEGPLVHIGS CIASLLGQGG TDNHRIKWRW LRYFNNDRDR RDLITCGSAA GVCAAFRSPV GGVLFALEEV ATWWRSALLW RTFFSTAVVV VVLREFIEIC
301: NSGKCGLFGK GGLIMFDVSH VTYTYHVTDI IPVMLIGVIG GILGSLYNHL LHKVLRLYNL INEKGKIHKV LLSLTVSLFT SVCLYGLPFL AKCKPCDPSI
401: DEICPTNGRS GNFKQFHCPK GYYNDLATLL LTTNDDAVRN LFSSNTPNEF GMGSLWIFFV LYCILGLFTF GIATPSGLFL PIILMGAAYG RMLGAAMGSY
501: TSIDQGLYAV LGAAALMAGS MRMTVSLCVI FLELTNNLLL LPITMIVLLI AKTVGDSFNP SIYDIILHLK GLPFLEANPE PWMRNLTVGE LGDAKPPVVT
601: LQGVEKVSNI VDVLKNTTHN AFPVLDEAEV PQVGLATGAT ELHGLILRAH LVKVLKKRWF LTEKRRTEEW EVREKFPWDE LAEREDNFDD VAITSAEMEM
701: YVDLHPLTNT TPYTVMENMS VAKALVLFRQ VGLRHLLIVP KIQASGMCPV VGILTRQDLR AYNILQAFPL LEKSKGGKTH
Arabidopsis Description
CLC-BChloride channel protein [Source:UniProtKB/TrEMBL;Acc:A0A178VKG6]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.