Factsheet for Bra030328.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
plasma membrane 5
extracellular 1
golgi 1
endoplasmic reticulum 1
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	plasma membrane
Plant-mPloc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra012567.1-P
Bra013361.1-P
Bra027174.1-P
Bra030034.1-P
Bra032817.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G40890.1	Bra030034.1-P	AT1G27300.1	21798944
AT5G40890.1	Bra032817.1-P	AT1G27300.1	21798944
AT5G40890.1	Bra027174.1-P	AT3G16310.1	21798944
AT5G40890.1	Bra012567.1-P	AT4G19030.1	21798944
AT5G40890.1	Bra013361.1-P	AT4G19030.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY15925	Canola	plasma membrane	99.87	99.87
CDX99630	Canola	plasma membrane	99.1	99.1
Bra028478.1-P	Field mustard	plasma membrane	96.52	97.27
AT5G40890.1	Thale cress	plasma membrane	94.72	94.84
Bra025253.1-P	Field mustard	plasma membrane	86.47	85.7
Bra032985.1-P	Field mustard	plasma membrane	86.08	85.31
VIT_14s0068g02190.t01	Wine grape	plasma membrane	80.67	79.34
KRG94508	Soybean	plasma membrane	80.41	78.99
KRH06955	Soybean	plasma membrane	75.39	78.52
KRH57669	Soybean	plasma membrane	78.22	78.12
Solyc02g068080.2.1	Tomato	peroxisome, plasma membrane, vacuole	77.84	77.04
PGSC0003DMT400017962	Potato	peroxisome, plasma membrane, vacuole	77.71	76.91
Solyc02g094060.2.1	Tomato	plasma membrane	69.85	71.04
PGSC0003DMT400052072	Potato	plasma membrane	70.62	70.8
GSMUA_Achr3P16100_001	Banana	plasma membrane	65.98	70.62
TraesCS6A01G098600.1	Wheat	plasma membrane	67.91	67.74
TraesCS6B01G126400.1	Wheat	plasma membrane	68.17	67.22
TraesCS6D01G084300.1	Wheat	cytosol, nucleus, plasma membrane	68.04	67.09
TraesCS6B01G126800.1	Wheat	plasma membrane	67.53	66.84
TraesCS6D01G084000.2	Wheat	plasma membrane	67.4	66.71
Zm00001d046919_P001	Maize	plasma membrane	68.04	65.92
EER90148	Sorghum	plasma membrane	68.04	65.92
TraesCS6A01G098500.2	Wheat	cytosol, peroxisome, plasma membrane	66.24	64.57
HORVU0Hr1G015220.3	Barley	cytosol	28.99	54.74
Bra038948.1-P	Field mustard	plasma membrane	52.45	53.27
Bra022507.1-P	Field mustard	plasma membrane	51.03	51.1
Bra000596.1-P	Field mustard	plasma membrane	51.03	51.1
Os12t0438600-01	Rice	plasma membrane	9.54	48.68
Bra009891.1-P	Field mustard	plasma membrane	42.4	41.54

Protein Annotations

MapMan:24.2.16	Gene3D:3.10.580.10	EnsemblPlantsGene:Bra030328	EnsemblPlants:Bra030328.1	EnsemblPlants:Bra030328.1-P	InterPro:CBS_dom
InterPro:Cl-channel_core	InterPro:Cl-channel_volt-gated	InterPro:Cl_channel_pln	GO:GO:0003674	GO:GO:0005215	GO:GO:0005216
GO:GO:0005247	GO:GO:0005575	GO:GO:0006810	GO:GO:0006811	GO:GO:0006821	GO:GO:0008150
GO:GO:0016020	GO:GO:0016021	GO:GO:0034220	GO:GO:0055085	GO:GO:1902476	InterPro:IPR000644
InterPro:IPR014743	UniProt:M4ENF8	PFAM:PF00571	PFAM:PF00654	PRINTS:PR00762	PRINTS:PR01120
PFscan:PS51371	PANTHER:PTHR11689	PANTHER:PTHR11689:SF67	SMART:SM00116	SUPFAM:SSF54631	SUPFAM:SSF81340
TMHMM:TMhelix	UniParc:UPI0002543A68	SEG:seg	:	:	:

Description

AT5G40890 (E=0.0) ATCLC-A, CLC-A, CLCA | ATCLC-A (CHLORIDE CHANNEL A); anion channel/ nitrate transmembrane transporter/ voltage-gated chloride channel

Coordinates

chrA04:-:9073237..9077103

Molecular Weight (calculated)

85447.6 Da

IEP (calculated)

8.003

GRAVY (calculated)

0.256

Length

776 amino acids

Sequence
(BLAST)

001: MAEDGNLHIG NSNYNREEEA DPENNTMNQP LLKRHRTLSS TPLALVGTKV SHIESLDYEI NENDLFKHDW RSRSKAQVFQ YIFAKWTLAC LVGLLTGLIA
101: TLINLAVENI AGYKLLAVGY YIAQDRYLTG LLIFTGANLG LTLVATVLVV VFAPTAAGPG IPEIKAYLNG VDTPNMFGAT TMIVKIVGSI GAVAAGLDLG
201: KEGPLVHIGS CIASLLGQGG PDNHRIKWRW LRYFNNDRDR RDLITCGSAS GVCAAFRSPV GGVLFALEEV ATWWRSALLW RTFFSTAVVV VVLRAFIEIC
301: NSGKCGLFGK GGLIMFDVSH VEVRYHAVDI IPVTLIGVFG GILGSLYNHL LHKVLRLYNL INQKGKIHKV LLSLSVSLFT SVCLYGLPFL AECKPCNPSI
401: DEACPTNGRS GNFKQFNCPN GYYNDLATLF LTTNDDAVRN VFSSNTPNEF GMVSLWIYFG LYCILGLITF GIATPSGLFL PIILMGSAYG RMLGTVMGSY
501: TKIDQGLYAV LGAASLMAGS MRMTVSLCVI FLELTNNLLL LPITMFVLLI AKTVGDSFNL SIYEIILHLK GLPFLEANPE PWMRNLTVGE LVDAKPPVIT
601: LRGVEKVANI VDALRNTTHN AFPVLDGEDV DNGAGTELHG LILRAHLVKV LKKRWFLNEK RRTEEWEVRE KFTPVELAER EDNFDDVAIT SSEMQMYVDL
701: HPLTNTTPYT VVQSMSVAKA LVLFRSVGLR HLLVVPKIQA SGMSPVIGIL TRQDLRAYNI LQAFPHLDKH KSGKLR

Best Arabidopsis Sequence Match ( AT5G40890.1 )
(BLAST)

001: MDEDGNLQIS NSNYNGEEEG EDPENNTLNQ PLLKRHRTLS STPLALVGAK VSHIESLDYE INENDLFKHD WRSRSKAQVF QYIFLKWTLA CLVGLFTGLI
101: ATLINLAVEN IAGYKLLAVG YYIAQDRFWT GLMVFTGANL GLTLVATVLV VYFAPTAAGP GIPEIKAYLN GIDTPNMFGF TTMMVKIVGS IGAVAAGLDL
201: GKEGPLVHIG SCIASLLGQG GPDNHRIKWR WLRYFNNDRD RRDLITCGSA SGVCAAFRSP VGGVLFALEE VATWWRSALL WRTFFSTAVV VVVLRAFIEI
301: CNSGKCGLFG SGGLIMFDVS HVEVRYHAAD IIPVTLIGVF GGILGSLYNH LLHKVLRLYN LINQKGKIHK VLLSLGVSLF TSVCLFGLPF LAECKPCDPS
401: IDEICPTNGR SGNFKQFNCP NGYYNDLSTL LLTTNDDAVR NIFSSNTPNE FGMVSLWIFF GLYCILGLIT FGIATPSGLF LPIILMGSAY GRMLGTAMGS
501: YTNIDQGLYA VLGAASLMAG SMRMTVSLCV IFLELTNNLL LLPITMFVLL IAKTVGDSFN LSIYEIILHL KGLPFLEANP EPWMRNLTVG ELNDAKPPVV
601: TLNGVEKVAN IVDVLRNTTH NAFPVLDGAD QNTGTELHGL ILRAHLVKVL KKRWFLNEKR RTEEWEVREK FTPVELAERE DNFDDVAITS SEMQLYVDLH
701: PLTNTTPYTV VQSMSVAKAL VLFRSVGLRH LLVVPKIQAS GMSPVIGILT RQDLRAYNIL QAFPHLDKHK SGKAR

Arabidopsis Description

CLC-AChloride channel protein CLC-a [Source:UniProtKB/Swiss-Prot;Acc:P92941]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.