Factsheet for Bra009891.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
plasma membrane 6
extracellular 1
endoplasmic reticulum 1
vacuole 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	plasma membrane
MultiLoc:	plasma membrane
Plant-mPloc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX88226	Canola	plasma membrane	100.0	100.0
AT5G26240.1	Thale cress	plasma membrane	97.1	97.1
VIT_05s0020g03090.t01	Wine grape	plasma membrane	83.08	82.25
KRH77868	Soybean	plasma membrane	82.2	81.27
Solyc09g075800.2.1	Tomato	plasma membrane	80.93	80.83
KRH27622	Soybean	plasma membrane	81.44	80.52
GSMUA_Achr4P06890_001	Banana	plasma membrane	66.41	77.35
GSMUA_Achr4P06880_001	Banana	cytosol	8.84	76.09
Zm00001d033597_P004	Maize	plasma membrane	74.37	75.42
KXG37802	Sorghum	plasma membrane	75.38	74.81
HORVU4Hr1G005590.4	Barley	plasma membrane	20.2	74.42
TraesCS4D01G033500.1	Wheat	plasma membrane	75.38	74.35
TraesCS4A01G277600.2	Wheat	plasma membrane	75.38	74.07
TraesCS4B01G035500.1	Wheat	plasma membrane	75.25	73.95
HORVU0Hr1G040330.16	Barley	plasma membrane	54.04	72.79
Os03t0695700-01	Rice	extracellular, plasma membrane	24.12	71.0
GSMUA_Achr7P27080_001	Banana	mitochondrion, plasma membrane	21.34	59.93
Bra038948.1-P	Field mustard	plasma membrane	43.81	45.42
Bra000596.1-P	Field mustard	plasma membrane	44.07	45.03
Bra022507.1-P	Field mustard	plasma membrane	43.81	44.77
Bra028478.1-P	Field mustard	plasma membrane	41.41	42.6
Bra030328.1-P	Field mustard	plasma membrane	41.54	42.4
Bra025253.1-P	Field mustard	plasma membrane	41.67	42.15
Bra032985.1-P	Field mustard	plasma membrane	40.78	41.25

Protein Annotations

Gene3D:1.10.3080.10	MapMan:24.2.16	Gene3D:3.10.580.10	EnsemblPlantsGene:Bra009891	EnsemblPlants:Bra009891.1	EnsemblPlants:Bra009891.1-P
InterPro:CBS_dom	InterPro:Cl-channel_core	InterPro:Cl-channel_volt-gated	InterPro:Cl_channel_pln	GO:GO:0003674	GO:GO:0005215
GO:GO:0005216	GO:GO:0005247	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005794	GO:GO:0005802	GO:GO:0006810	GO:GO:0006811	GO:GO:0006821	GO:GO:0008150
GO:GO:0009653	GO:GO:0009826	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016043
GO:GO:0016049	GO:GO:0034220	GO:GO:0040007	GO:GO:0055085	GO:GO:1902476	InterPro:IPR000644
InterPro:IPR014743	UniProt:M4D093	PFAM:PF00571	PFAM:PF00654	PRINTS:PR00762	PRINTS:PR01120
PFscan:PS51371	PANTHER:PTHR11689	PANTHER:PTHR11689:SF105	SMART:SM00116	SUPFAM:SSF54631	SUPFAM:SSF81340
TMHMM:TMhelix	UniParc:UPI000253F3C6	SEG:seg	:	:	:

Description

AT5G26240 (E=0.0) CLC-D, ATCLC-D | CLC-D (CHLORIDE CHANNEL D); anion channel/ voltage-gated chloride channel

Coordinates

chrA06:+:17927308..17932338

Molecular Weight (calculated)

87107.1 Da

IEP (calculated)

8.150

GRAVY (calculated)

0.214

Length

792 amino acids

Sequence
(BLAST)

001: MLSNHLQNGI ESDNLLWSRV PDSDDTSTDG VGLLSSPRDG GGGVDSLDYE VIENYAYREE QAHRGKLYVG YYVAVKWFFS LLIGIGTGLA AVFINLSVEN
101: FAGWKFALTF AIIQKSYFAG FIVYLVINLV LVFSSAYIIT QFAPAAAGSG IPEIKGYLNG IDIPGTLLFR TLIGKIFGSI GSVGGGLALG KEGPLVHTGA
201: CIASLLGQGG STKYHFNSRW PQLFKSDRDR RDLVTCGCAA GVAAAFRAPV GGVLFALEEV TSWWRSQLMW RVFFTSAIVA VVVRTAMGWC KSGICGHFGG
301: GGFIIWDVSD GQDDYYFKEL LPMAVIGVIG GLLGALFNQL TYYMTSWRRN YLHKKGNRVK IYEACIISCL TSAISFGLPL LRKCSPCPET VPDSGIECPR
401: PPGMYGNYVN FYCKTDNEYN DLATIFFNTQ DDAIRNLFSA KTMREFSAQS LLTFLAMFYT LAVVTFGTAV PAGQFVPGIM IGSTYGRLVG MFVVRFYKKL
501: NIEEGTYALL GAASFLGGSM RMTVSLCVIM VEITNNLKLL PLIMLVLLVS KAVGDAFNEG LYEVQARLKG IPLLESRPKY HMRQMIAKEA CQSQKVISLP
601: RVIRVADVAS ILRSNKHNGF PVIDHTRSGE TLVIGLVLRS HLLVLLQSKV DFQHSPLPCD PSARPIMHRF SEFAKPVSSK GLCIEDIHLT SDDLEMYIDL
701: APFLNPSPYV VPEDMSLTKV YNLFRQLGLR HLFVVPRPSR VIGLITRKDL LIEENGESSA VELQQSTSVR GRYSETATRT DAGRPLLDDL LG

Best Arabidopsis Sequence Match ( AT5G26240.1 )
(BLAST)

001: MLSNHLQNGI ESDNLLWSRV PESDDTSTDD ITLLNSHRDG DGGVNSLDYE VIENYAYREE QAHRGKLYVG YYVAVKWFFS LLIGIGTGLA AVFINLSVEN
101: FAGWKFALTF AIIQKSYFAG FIVYLLINLV LVFSSAYIIT QFAPAAAGSG IPEIKGYLNG IDIPGTLLFR TLIGKIFGSI GSVGGGLALG KEGPLVHTGA
201: CIASLLGQGG STKYHLNSRW PQLFKSDRDR RDLVTCGCAA GVAAAFRAPV GGVLFALEEV TSWWRSQLMW RVFFTSAIVA VVVRTAMGWC KSGICGHFGG
301: GGFIIWDVSD GQDDYYFKEL LPMAVIGVIG GLLGALFNQL TLYMTSWRRN SLHKKGNRVK IIEACIISCI TSAISFGLPL LRKCSPCPES VPDSGIECPR
401: PPGMYGNYVN FFCKTDNEYN DLATIFFNTQ DDAIRNLFSA KTMREFSAQS LLTFLAMFYT LAVVTFGTAV PAGQFVPGIM IGSTYGRLVG MFVVRFYKKL
501: NIEEGTYALL GAASFLGGSM RMTVSLCVIM VEITNNLKLL PLIMLVLLIS KAVGDAFNEG LYEVQARLKG IPLLESRPKY HMRQMIAKEA CQSQKVISLP
601: RVIRVADVAS ILGSNKHNGF PVIDHTRSGE TLVIGLVLRS HLLVLLQSKV DFQHSPLPCD PSARNIRHSF SEFAKPVSSK GLCIEDIHLT SDDLEMYIDL
701: APFLNPSPYV VPEDMSLTKV YNLFRQLGLR HLFVVPRPSR VIGLITRKDL LIEENGESSA VELQQSTSVR GRYSETATRM DAARPLLDDL LG

Arabidopsis Description

CLC-DChloride channel protein CLC-d [Source:UniProtKB/Swiss-Prot;Acc:P92943]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.