CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
plasma membrane 5
extracellular 1
endoplasmic reticulum 1
vacuole 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	plasma membrane
Plant-mPloc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH27622	Soybean	plasma membrane	98.63	98.63
VIT_05s0020g03090.t01	Wine grape	plasma membrane	85.52	85.62
AT5G26240.1	Thale cress	plasma membrane	81.65	82.58
Bra009891.1-P	Field mustard	plasma membrane	81.27	82.2
CDX88226	Canola	plasma membrane	81.27	82.2
Solyc09g075800.2.1	Tomato	plasma membrane	80.52	81.34
CDY52633	Canola	plasma membrane	81.4	81.3
GSMUA_Achr4P06890_001	Banana	plasma membrane	67.92	80.0
HORVU4Hr1G005590.4	Barley	plasma membrane	20.6	76.74
Zm00001d033597_P004	Maize	plasma membrane	74.03	75.93
KXG37802	Sorghum	plasma membrane	74.91	75.19
TraesCS4D01G033500.1	Wheat	plasma membrane	74.91	74.72
TraesCS4A01G277600.2	Wheat	plasma membrane	74.91	74.44
TraesCS4B01G035500.1	Wheat	plasma membrane	74.91	74.44
HORVU0Hr1G040330.16	Barley	plasma membrane	53.56	72.96
GSMUA_Achr4P06880_001	Banana	cytosol	8.24	71.74
Os03t0695700-01	Rice	extracellular, plasma membrane	23.1	68.77
GSMUA_Achr7P27080_001	Banana	mitochondrion, plasma membrane	20.47	58.16
KRH20183	Soybean	plasma membrane	44.94	47.06
KRH38787	Soybean	cytosol	43.2	43.85
KRH09287	Soybean	cytosol, nucleus, plasma membrane	43.2	43.47
KRH57669	Soybean	plasma membrane	41.7	42.99
KRG94508	Soybean	plasma membrane	41.7	42.28
KRH06955	Soybean	plasma membrane	38.83	41.74

Protein Annotations

Gene3D:1.10.3080.10	EntrezGene:100811908	MapMan:24.2.16	Gene3D:3.10.580.10	EMBL:ACUP02000685	InterPro:CBS_dom
InterPro:Cl-channel_core	InterPro:Cl-channel_volt-gated	InterPro:Cl_channel_pln	EnsemblPlantsGene:GLYMA_01G239000	GO:GO:0003674	GO:GO:0005215
GO:GO:0005216	GO:GO:0005247	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005794	GO:GO:0005802	GO:GO:0006810	GO:GO:0006811	GO:GO:0006821	GO:GO:0008150
GO:GO:0016020	GO:GO:0016021	GO:GO:0055085	GO:GO:1902476	UniProt:I1JAU5	InterPro:IPR000644
InterPro:IPR014743	EnsemblPlants:KRH77868	ProteinID:KRH77868	ProteinID:KRH77868.1	PFAM:PF00571	PFAM:PF00654
PRINTS:PR00762	PRINTS:PR01120	PFscan:PS51371	PANTHER:PTHR11689	PANTHER:PTHR11689:SF92	SMART:SM00116
SUPFAM:SSF54631	SUPFAM:SSF81340	TMHMM:TMhelix	UniParc:UPI000211EBE7	SEG:seg	:

Description

hypothetical protein

Coordinates

chr1:-:56326318..56334571

Molecular Weight (calculated)

88231.6 Da

IEP (calculated)

8.399

GRAVY (calculated)

0.220

Length

801 amino acids

Sequence
(BLAST)

001: MLSNHFQNGI ETARLVWSRI PNSEESQLLD DAVGILKKND GGGVESLDYE VIENFAYREE QAQRGKLYVS YLLVVKWFFA LLIGICTGLA AVFINIAVEN
101: FAGWKFSVTF NIIQKSYIAG FVVYVLINLA LVFSSVYIIT QFAPAAAGSG IPEIKGYLNG VDIHGILLFR TLIGKIFGSI GSVGGGLALG KEGPLVHTGA
201: CIASLLGQGG STKYHLNSRW FQVFKSDRDR RDLVTCGCAA GVAAAFRAPV GGVLFALEEV TSWWRSQLMW RVFFTSAVVA VVVRAAMGWC KSGKCGHFGS
301: GGFIIWDISD GQEDYSFAEL FPMAIIGVIG GLLGSLFNQL TLYITTWRRN HLHKKGNRVK IIEACLVSIL TSAISFGLPL LRKCSPCPDS DPASGIECPR
401: PPGMYGNYVN FFCSKDKEYN DLATIFFNTQ DDAIRNLFSA KTINEYSSQS LLTFLVMFYA LAVVTFGTAV PAGQFVPGIM IGSTYGRLVG MFVVKYYRKL
501: NIEEGTYALL GAASFLGGSM RMTVSLCVIM VEISNNLKFL PLIMLVLLIS KAVGDAFNEG IYEEQAQLRG IPLLESRPKY EMRNMTAKEA CGSGRVVSFP
601: RVVKVSDVVS ILRSNKHNGF PVIDHTRSGE PLVIGLVLRS HLLVILQSKV DFQHSPLPSD PRGGGRSIRH DSGEFAKPVS SKGICIDDIH LSSDDLEMYI
701: DLAPFLNPSP YIVPEDMSLT KVYNLFRQLG LRHLFVVPRP SRVLGLITRK DLLIEDKENV NTLELQSTSV RIPHQNKRLM TRNIDVEHPL LSGLLQNQIP
801: D

Best Arabidopsis Sequence Match ( AT5G26240.1 )
(BLAST)

001: MLSNHLQNGI ESDNLLWSRV PESDDTSTDD ITLLNSHRDG DGGVNSLDYE VIENYAYREE QAHRGKLYVG YYVAVKWFFS LLIGIGTGLA AVFINLSVEN
101: FAGWKFALTF AIIQKSYFAG FIVYLLINLV LVFSSAYIIT QFAPAAAGSG IPEIKGYLNG IDIPGTLLFR TLIGKIFGSI GSVGGGLALG KEGPLVHTGA
201: CIASLLGQGG STKYHLNSRW PQLFKSDRDR RDLVTCGCAA GVAAAFRAPV GGVLFALEEV TSWWRSQLMW RVFFTSAIVA VVVRTAMGWC KSGICGHFGG
301: GGFIIWDVSD GQDDYYFKEL LPMAVIGVIG GLLGALFNQL TLYMTSWRRN SLHKKGNRVK IIEACIISCI TSAISFGLPL LRKCSPCPES VPDSGIECPR
401: PPGMYGNYVN FFCKTDNEYN DLATIFFNTQ DDAIRNLFSA KTMREFSAQS LLTFLAMFYT LAVVTFGTAV PAGQFVPGIM IGSTYGRLVG MFVVRFYKKL
501: NIEEGTYALL GAASFLGGSM RMTVSLCVIM VEITNNLKLL PLIMLVLLIS KAVGDAFNEG LYEVQARLKG IPLLESRPKY HMRQMIAKEA CQSQKVISLP
601: RVIRVADVAS ILGSNKHNGF PVIDHTRSGE TLVIGLVLRS HLLVLLQSKV DFQHSPLPCD PSARNIRHSF SEFAKPVSSK GLCIEDIHLT SDDLEMYIDL
701: APFLNPSPYV VPEDMSLTKV YNLFRQLGLR HLFVVPRPSR VIGLITRKDL LIEENGESSA VELQQSTSVR GRYSETATRM DAARPLLDDL LG

Arabidopsis Description

CLC-DChloride channel protein CLC-d [Source:UniProtKB/Swiss-Prot;Acc:P92943]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.