Factsheet for Zm00001d033597_P004

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plasma membrane 4
extracellular 1
endoplasmic reticulum 1
vacuole 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	secretory
MultiLoc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG37802	Sorghum	plasma membrane	96.16	94.11
HORVU4Hr1G005590.4	Barley	plasma membrane	24.33	88.37
TraesCS4D01G033500.1	Wheat	plasma membrane	90.4	87.92
TraesCS4A01G277600.2	Wheat	plasma membrane	90.53	87.72
TraesCS4B01G035500.1	Wheat	plasma membrane	90.27	87.47
HORVU0Hr1G040330.16	Barley	plasma membrane	64.02	85.03
Os03t0695700-01	Rice	extracellular, plasma membrane	28.94	84.01
GSMUA_Achr4P06890_001	Banana	plasma membrane	70.81	81.32
GSMUA_Achr4P06880_001	Banana	cytosol	9.48	80.43
VIT_05s0020g03090.t01	Wine grape	plasma membrane	77.98	76.12
Bra009891.1-P	Field mustard	plasma membrane	75.42	74.37
CDX88226	Canola	plasma membrane	75.42	74.37
KRH77868	Soybean	plasma membrane	75.93	74.03
AT5G26240.1	Thale cress	plasma membrane	75.03	73.99
CDY52633	Canola	plasma membrane	75.8	73.82
KRH27622	Soybean	plasma membrane	75.42	73.53
Solyc09g075800.2.1	Tomato	plasma membrane	74.39	73.27
Zm00001d025474_P003	Maize	plasma membrane	46.22	45.41
Zm00001d042651_P001	Maize	plasma membrane	44.56	43.83
Zm00001d002091_P002	Maize	plasma membrane	42.0	43.27
Zm00001d016855_P002	Maize	plasma membrane	45.58	43.0
Zm00001d039812_P001	Maize	plasma membrane	13.32	42.45
Zm00001d015702_P001	Maize	plasma membrane	34.83	41.98
Zm00001d046919_P001	Maize	plasma membrane	40.59	39.58
Zm00001d015700_P001	Maize	plasma membrane	10.63	37.73
Zm00001d003594_P001	Maize	plasma membrane	10.12	27.34

Protein Annotations

Gene3D:1.10.3080.10	EntrezGene:103643844	MapMan:24.2.16	Gene3D:3.10.580.10	UniProt:A0A1D6L0A3	InterPro:CBS_dom
InterPro:Cl-channel_core	InterPro:Cl-channel_volt-gated	InterPro:Cl_channel_pln	ncoils:Coil	GO:GO:0003674	GO:GO:0005215
GO:GO:0005216	GO:GO:0005247	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005794	GO:GO:0005802	GO:GO:0006810	GO:GO:0006811	GO:GO:0006821	GO:GO:0008150
GO:GO:0009653	GO:GO:0009826	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016043
GO:GO:0016049	GO:GO:0034220	GO:GO:0040007	GO:GO:0055085	GO:GO:1902476	InterPro:IPR000644
InterPro:IPR014743	ProteinID:ONM07998.1	PFAM:PF00571	PFAM:PF00654	PRINTS:PR00762	PRINTS:PR01120
PFscan:PS51371	PANTHER:PTHR11689	PANTHER:PTHR11689:SF92	SMART:SM00116	SUPFAM:SSF54631	SUPFAM:SSF81340
TMHMM:TMhelix	UniParc:UPI0004DEA1CF	EnsemblPlantsGene:Zm00001d033597	EnsemblPlants:Zm00001d033597_P004	EnsemblPlants:Zm00001d033597_T004	SEG:seg

Description

Chloride channel protein CLC-d

Coordinates

chr1:-:268078791..268105806

Molecular Weight (calculated)

85809.4 Da

IEP (calculated)

8.049

GRAVY (calculated)

0.236

Length

781 amino acids

Sequence
(BLAST)

001: MLSGVDHDVP DGIGMARLAW TRLPTADGEG AGPSTSEAAD DELLSGAAIE SLDYEVIENY AYREEQAQRS KFWVPYYVML KWLFALLIGV GTGLAAIFIN
101: LAVENFSGWK YTATFAIIKH SYFVGFFVYT VFNLALVFSS VYIVTNFAPA AAGSGIPEIK GYLNGVDTHG ILLFRTLVGK IFGSIGSVGG GLALGKEGPL
201: VHTGACIASL LGQGGSAKYH LSSRWVRIFE SDRDRRDLVT CGCAAGVAAA FRAPVGGVLF ALEEVTSWWR SHLMWRVFFT SAVVAVVVRS AMNWCNSGKC
301: GHFGAGGFII WDISGGQEDY SYQELFPMAI IGVIGGLLGA LFNQLTLYIT KWRRTCLHKK GKRVQIFEAC LISLVTSTIS FVLPLLRKCS PCPKLETNSG
401: IECPHPPGTD GNFVNFYCSQ DREYNDLATI FFNTQDDAIR NLFSAKTFHE YSAQSLITFL VMFYFLAVVT FGTAVPAGQF VPGIMIGSTY GRLVGMFVVK
501: FYKKLNIEEG TYALLGAASF LGGSMRMTVS LCVIMVEITN NLKLLPLIML VLLVSKAVGD FFNEGLYEEQ ARLRGIPLLD SRPKQVMRNM NARDACKNQK
601: VVCLPRVSRV VDIISVLRTN KHNGFPVVDR GQNGESLVIG LILRSHLLVL LQAKVDFQNS AFPCGPGVLN RHNFSDFVKP ASSKGKSIDD IHLTEDELGL
701: YLDLAPFLNP SPYIVPEDMS LAKVYNLFRQ LGLRHIFVVP RPSRVVGLIT RKDLLLEEDN NNVMPELQST SGLAERQNAR G

Best Arabidopsis Sequence Match ( AT5G26240.1 )
(BLAST)

001: MLSNHLQNGI ESDNLLWSRV PESDDTSTDD ITLLNSHRDG DGGVNSLDYE VIENYAYREE QAHRGKLYVG YYVAVKWFFS LLIGIGTGLA AVFINLSVEN
101: FAGWKFALTF AIIQKSYFAG FIVYLLINLV LVFSSAYIIT QFAPAAAGSG IPEIKGYLNG IDIPGTLLFR TLIGKIFGSI GSVGGGLALG KEGPLVHTGA
201: CIASLLGQGG STKYHLNSRW PQLFKSDRDR RDLVTCGCAA GVAAAFRAPV GGVLFALEEV TSWWRSQLMW RVFFTSAIVA VVVRTAMGWC KSGICGHFGG
301: GGFIIWDVSD GQDDYYFKEL LPMAVIGVIG GLLGALFNQL TLYMTSWRRN SLHKKGNRVK IIEACIISCI TSAISFGLPL LRKCSPCPES VPDSGIECPR
401: PPGMYGNYVN FFCKTDNEYN DLATIFFNTQ DDAIRNLFSA KTMREFSAQS LLTFLAMFYT LAVVTFGTAV PAGQFVPGIM IGSTYGRLVG MFVVRFYKKL
501: NIEEGTYALL GAASFLGGSM RMTVSLCVIM VEITNNLKLL PLIMLVLLIS KAVGDAFNEG LYEVQARLKG IPLLESRPKY HMRQMIAKEA CQSQKVISLP
601: RVIRVADVAS ILGSNKHNGF PVIDHTRSGE TLVIGLVLRS HLLVLLQSKV DFQHSPLPCD PSARNIRHSF SEFAKPVSSK GLCIEDIHLT SDDLEMYIDL
701: APFLNPSPYV VPEDMSLTKV YNLFRQLGLR HLFVVPRPSR VIGLITRKDL LIEENGESSA VELQQSTSVR GRYSETATRM DAARPLLDDL LG

Arabidopsis Description

CLC-DChloride channel protein CLC-d [Source:UniProtKB/Swiss-Prot;Acc:P92943]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.