CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
plasma membrane 4
extracellular 1
endoplasmic reticulum 1
vacuole 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	nucleus, plasma membrane
BaCelLo:	nucleus
MultiLoc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX88226	Canola	plasma membrane	98.0	99.24
AT5G26240.1	Thale cress	plasma membrane	96.01	97.22
VIT_05s0020g03090.t01	Wine grape	plasma membrane	82.42	82.62
KRH77868	Soybean	plasma membrane	81.3	81.4
Solyc09g075800.2.1	Tomato	plasma membrane	80.17	81.08
KRH27622	Soybean	plasma membrane	80.67	80.77
GSMUA_Achr4P06890_001	Banana	plasma membrane	65.71	77.5
GSMUA_Achr4P06880_001	Banana	cytosol	8.73	76.09
Zm00001d033597_P004	Maize	plasma membrane	73.82	75.8
KXG37802	Sorghum	plasma membrane	74.81	75.19
HORVU4Hr1G005590.4	Barley	plasma membrane	20.07	74.88
TraesCS4D01G033500.1	Wheat	plasma membrane	74.94	74.84
TraesCS4A01G277600.2	Wheat	plasma membrane	74.94	74.57
TraesCS4B01G035500.1	Wheat	plasma membrane	74.81	74.44
HORVU0Hr1G040330.16	Barley	plasma membrane	53.62	73.13
Os03t0695700-01	Rice	extracellular, plasma membrane	23.69	70.63
GSMUA_Achr7P27080_001	Banana	mitochondrion, plasma membrane	21.07	59.93
CDY47559	Canola	plasma membrane	43.52	45.68
CDY12393	Canola	plasma membrane	43.27	45.42
CDX83179	Canola	plasma membrane	43.77	45.29
CDY21447	Canola	plasma membrane	43.64	45.16
CDY16376	Canola	plasma membrane	43.39	44.9
CDX91539	Canola	plasma membrane	43.27	44.77
CDY11722	Canola	plasma membrane	41.02	42.73
CDX67478	Canola	plasma membrane	41.02	42.73
CDX83663	Canola	plasma membrane	41.52	42.53
CDY15925	Canola	plasma membrane	41.15	42.53
CDY13685	Canola	plasma membrane	41.4	42.4
CDX99630	Canola	plasma membrane	40.9	42.27
CDY34173	Canola	plasma membrane	40.52	41.67
CDY28488	Canola	plasma membrane	40.4	41.38

Protein Annotations

Gene3D:1.10.3080.10	MapMan:24.2.16	Gene3D:3.10.580.10	GO:A0A078IUE5	UniProt:A0A078IUE5	InterPro:CBS_dom
EnsemblPlants:CDY52633	ProteinID:CDY52633	ProteinID:CDY52633.1	InterPro:Cl-channel_core	InterPro:Cl-channel_volt-gated	InterPro:Cl_channel_pln
GO:GO:0003674	GO:GO:0005215	GO:GO:0005216	GO:GO:0005247	GO:GO:0005575	GO:GO:0006810
GO:GO:0006811	GO:GO:0006821	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0034220
GO:GO:0055085	GO:GO:1902476	EnsemblPlantsGene:GSBRNA2T00007420001	InterPro:IPR000644	InterPro:IPR014743	PFAM:PF00571
PFAM:PF00654	PRINTS:PR00762	PRINTS:PR01120	PFscan:PS51371	PANTHER:PTHR11689	PANTHER:PTHR11689:SF105
SMART:SM00116	SUPFAM:SSF54631	SUPFAM:SSF81340	TMHMM:TMhelix	UniParc:UPI0004EE2819	SEG:seg

Description

BnaC07g49590DChloride channel protein [Source:UniProtKB/TrEMBL;Acc:A0A078IUE5]

Coordinates

chrLK033109:+:61944..67245

Molecular Weight (calculated)

88150.4 Da

IEP (calculated)

8.347

GRAVY (calculated)

0.217

Length

802 amino acids

Sequence
(BLAST)

001: MLSNHLQNGI ESDNLLWSRV PDSDDASTDG VGLLSSPRDG GGGVDSLDYE VIENYAYREE QAHRGKLYVG YYVAVKWFFS LLIGIGTGLA AVFINLSVEN
101: FAGWKFALTF AIIQKSYFAG FIVYLVINLV LVFSSAYIIT QFAPAAAGSG IPEIKGYLNG IDIPGTLLFR TLIGKIFGSI GSVGGGLALG KEGPLVHTGA
201: CIASLLGQGG STKYHLNSRW PQLFKSDRDR RDLVTCGCAA GVAAAFRAPV GGVLFALEEV TSWWRSQLMW RVFFTSAIVA VVVRTAMGWC KSGICGHFGG
301: GGFIIWDVSD GQDDYYFKEL LPMAVIGVIG GLLGALFNQL TYYMTSWRRN YLHKKGNRVK IYEACIISCL TSAISFGLPL LRKCSPCPET VTDSGIECPR
401: PPGMYGNYVN FYCKTDNEYN DLATIFFNTQ DDAIRNLFSA KTMREFSAQS LLTFLAMFYT LAVVTFGTAV PAGQFVPGIM IGSTYGRLVG MFVVRFYKKL
501: NIEEGTPLIQ KSLNLSYALL GAASFLGGSM RMTVSLCVIM VEITNNLKLL PLIMLVLLVS KAVGDAFNEG LYEVQARLKG IPLLESRPKY HMRQMIAKEA
601: CQSQKVISLP RVIRVADVAS ILRSNKHNGF PVIDHTRSGE TLVIGLVLRS HLLVLLQSKV DFQHSPLPCD PSARPIRHRF SEFAKPVSSK GLCIEDIHLT
701: SDDLEMYIDL APFLNPSPYV VPEDMSLTKV YNLFRQLGLR HLFVVPRPSR VIGLITRKDL LIEENGESSA VELQQSTSVR GRYSETATRA DAARPLLDDL
801: LG

Best Arabidopsis Sequence Match ( AT5G26240.1 )
(BLAST)

001: MLSNHLQNGI ESDNLLWSRV PESDDTSTDD ITLLNSHRDG DGGVNSLDYE VIENYAYREE QAHRGKLYVG YYVAVKWFFS LLIGIGTGLA AVFINLSVEN
101: FAGWKFALTF AIIQKSYFAG FIVYLLINLV LVFSSAYIIT QFAPAAAGSG IPEIKGYLNG IDIPGTLLFR TLIGKIFGSI GSVGGGLALG KEGPLVHTGA
201: CIASLLGQGG STKYHLNSRW PQLFKSDRDR RDLVTCGCAA GVAAAFRAPV GGVLFALEEV TSWWRSQLMW RVFFTSAIVA VVVRTAMGWC KSGICGHFGG
301: GGFIIWDVSD GQDDYYFKEL LPMAVIGVIG GLLGALFNQL TLYMTSWRRN SLHKKGNRVK IIEACIISCI TSAISFGLPL LRKCSPCPES VPDSGIECPR
401: PPGMYGNYVN FFCKTDNEYN DLATIFFNTQ DDAIRNLFSA KTMREFSAQS LLTFLAMFYT LAVVTFGTAV PAGQFVPGIM IGSTYGRLVG MFVVRFYKKL
501: NIEEGTYALL GAASFLGGSM RMTVSLCVIM VEITNNLKLL PLIMLVLLIS KAVGDAFNEG LYEVQARLKG IPLLESRPKY HMRQMIAKEA CQSQKVISLP
601: RVIRVADVAS ILGSNKHNGF PVIDHTRSGE TLVIGLVLRS HLLVLLQSKV DFQHSPLPCD PSARNIRHSF SEFAKPVSSK GLCIEDIHLT SDDLEMYIDL
701: APFLNPSPYV VPEDMSLTKV YNLFRQLGLR HLFVVPRPSR VIGLITRKDL LIEENGESSA VELQQSTSVR GRYSETATRM DAARPLLDDL LG

Arabidopsis Description

CLC-DChloride channel protein CLC-d [Source:UniProtKB/Swiss-Prot;Acc:P92943]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.