Factsheet for HORVU0Hr1G040330.16

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 5
golgi 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	secretory
iPSORT:	secretory
MultiLoc:	plasma membrane
PProwler:	secretory
TargetP:	secretory
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os03t0695700-01	Rice	extracellular, plasma membrane	40.48	88.48
GSMUA_Achr4P06880_001	Banana	cytosol	12.93	82.61
TraesCS4D01G033500.1	Wheat	plasma membrane	94.39	69.12
TraesCS4A01G277600.2	Wheat	plasma membrane	94.56	68.98
TraesCS4B01G035500.1	Wheat	plasma membrane	94.39	68.86
KXG37802	Sorghum	plasma membrane	88.78	65.41
Zm00001d033597_P004	Maize	plasma membrane	85.03	64.02
VIT_05s0020g03090.t01	Wine grape	plasma membrane	75.51	55.5
GSMUA_Achr4P06890_001	Banana	plasma membrane	63.78	55.15
AT5G26240.1	Thale cress	plasma membrane	73.13	54.29
Bra009891.1-P	Field mustard	plasma membrane	72.79	54.04
CDX88226	Canola	plasma membrane	72.79	54.04
CDY52633	Canola	plasma membrane	73.13	53.62
KRH77868	Soybean	plasma membrane	72.96	53.56
KRH27622	Soybean	plasma membrane	72.79	53.43
Solyc09g075800.2.1	Tomato	plasma membrane	71.77	53.22
HORVU2Hr1G077080.3	Barley	mitochondrion, peroxisome, plasma membrane, plastid	43.2	31.2
HORVU3Hr1G081920.1	Barley	plasma membrane, plastid	41.33	30.76
HORVU5Hr1G107380.2	Barley	plastid	39.12	27.22
HORVU0Hr1G015220.3	Barley	cytosol	8.33	11.92
HORVU4Hr1G005590.4	Barley	plasma membrane	1.02	2.79

Protein Annotations

Gene3D:1.10.3080.10	MapMan:24.2.16	Gene3D:3.10.580.10	UniProt:A0A287EDX6	InterPro:CBS_dom	InterPro:Cl-channel_core
InterPro:Cl-channel_volt-gated	InterPro:Cl_channel_pln	GO:GO:0003674	GO:GO:0005215	GO:GO:0005247	GO:GO:0005575
GO:GO:0006810	GO:GO:0006811	GO:GO:0006821	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021
GO:GO:0055085	GO:GO:1902476	EnsemblPlantsGene:HORVU0Hr1G040330	EnsemblPlants:HORVU0Hr1G040330.16	InterPro:IPR000644	InterPro:IPR014743
PFAM:PF00571	PFAM:PF00654	PRINTS:PR00762	PRINTS:PR01120	PFscan:PS51371	PANTHER:PTHR11689
PANTHER:PTHR11689:SF92	SMART:SM00116	SUPFAM:SSF54631	SUPFAM:SSF81340	TMHMM:TMhelix	UniParc:UPI000B46C30D
SEG:seg	:	:	:	:	:

Description

Chloride channel protein [Source:UniProtKB/TrEMBL;Acc:A0A287EDX6]

Coordinates

chrchrUn:+:249643373..249649506

Molecular Weight (calculated)

64753.9 Da

IEP (calculated)

8.512

GRAVY (calculated)

0.198

Length

588 amino acids

Sequence
(BLAST)

001: QKVTCGCAAG VAAAFRAPVG GVLFALEEVT SWWRSHLMWR VFFTSAVVAV VVRSAMNWCN SGKCGHFGAG GFIIWDISGG QEDYSYQELL PVAIIGVIGG
101: LLGALFNQLT LYITKWRRTY LHKKGKRVQI FEACLISLIT STVSFVLPLL RKCSPCPELE TSSGIQCPHP PGTDGNFVNF YCSKDNEYND LATIFFNSQD
201: DAIRNLFSAK TFHEYSAQSL ITFLVMFYSL AVVTFGTAVP AGQFVPGIMI GSTYGRLVGM SVVKFYKKLN VDEGTYALLG AASFLGGSMR MTVSLCVIMV
301: EITNNLQLLP LIMLVLLISK AVGDFFNEGL YEEQARLKGI PLLDSRPKQV MRNMNAKDAC KNQKVVCLSR VSRVVDIVSV LQSNKHNGFP VSRCQFYNTA
401: ASVGGLNNRF SFAVQIVERG QNGESLVIGL ILRSHLLVLL QSKVDFQNTP FPCGPGILNR HNFSDFVKPA SSKGKSIDDI HLTDEELGLY LDLAPFLNPS
501: PYIVPEDMSL AKVYNLFRQL GLRHIFVVPR PSRVVGLITR KDLLLEEDGN TATTELQSTS VRAYLNGKTA GGSVHLERPL LDSLMIEQ

Best Arabidopsis Sequence Match ( AT5G26240.1 )
(BLAST)

001: MLSNHLQNGI ESDNLLWSRV PESDDTSTDD ITLLNSHRDG DGGVNSLDYE VIENYAYREE QAHRGKLYVG YYVAVKWFFS LLIGIGTGLA AVFINLSVEN
101: FAGWKFALTF AIIQKSYFAG FIVYLLINLV LVFSSAYIIT QFAPAAAGSG IPEIKGYLNG IDIPGTLLFR TLIGKIFGSI GSVGGGLALG KEGPLVHTGA
201: CIASLLGQGG STKYHLNSRW PQLFKSDRDR RDLVTCGCAA GVAAAFRAPV GGVLFALEEV TSWWRSQLMW RVFFTSAIVA VVVRTAMGWC KSGICGHFGG
301: GGFIIWDVSD GQDDYYFKEL LPMAVIGVIG GLLGALFNQL TLYMTSWRRN SLHKKGNRVK IIEACIISCI TSAISFGLPL LRKCSPCPES VPDSGIECPR
401: PPGMYGNYVN FFCKTDNEYN DLATIFFNTQ DDAIRNLFSA KTMREFSAQS LLTFLAMFYT LAVVTFGTAV PAGQFVPGIM IGSTYGRLVG MFVVRFYKKL
501: NIEEGTYALL GAASFLGGSM RMTVSLCVIM VEITNNLKLL PLIMLVLLIS KAVGDAFNEG LYEVQARLKG IPLLESRPKY HMRQMIAKEA CQSQKVISLP
601: RVIRVADVAS ILGSNKHNGF PVIDHTRSGE TLVIGLVLRS HLLVLLQSKV DFQHSPLPCD PSARNIRHSF SEFAKPVSSK GLCIEDIHLT SDDLEMYIDL
701: APFLNPSPYV VPEDMSLTKV YNLFRQLGLR HLFVVPRPSR VIGLITRKDL LIEENGESSA VELQQSTSVR GRYSETATRM DAARPLLDDL LG

Arabidopsis Description

CLC-DChloride channel protein CLC-d [Source:UniProtKB/Swiss-Prot;Acc:P92943]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.