Factsheet for HORVU0Hr1G015220.3

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
MultiLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU1Hr1G076010.1
HORVU2Hr1G084420.1
HORVU3Hr1G026980.2
HORVU3Hr1G071060.1
HORVU7Hr1G088900.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G40890.1	HORVU2Hr1G084420.1	AT1G27300.1	21798944
AT5G40890.1	HORVU1Hr1G076010.1	AT3G16310.1	21798944
AT5G40890.1	HORVU3Hr1G026980.2	AT3G16310.1	21798944
AT5G40890.1	HORVU3Hr1G071060.1	AT3G16310.1	21798944
AT5G40890.1	HORVU7Hr1G088900.1	AT4G19030.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os12t0438600-01	Rice	plasma membrane	28.71	77.63
HORVU4Hr1G005590.4	Barley	plasma membrane	23.6	45.12
TraesCS6D01G084300.1	Wheat	cytosol, nucleus, plasma membrane	79.81	41.68
TraesCS6B01G126400.1	Wheat	plasma membrane	79.32	41.42
TraesCS6A01G098500.2	Wheat	cytosol, peroxisome, plasma membrane	79.81	41.21
EER90148	Sorghum	plasma membrane	72.02	36.95
Zm00001d046919_P001	Maize	plasma membrane	70.8	36.33
KRH06955	Soybean	plasma membrane	57.91	31.95
GSMUA_Achr3P16100_001	Banana	plasma membrane	55.47	31.45
Solyc02g068080.2.1	Tomato	peroxisome, plasma membrane, vacuole	58.64	30.74
PGSC0003DMT400017962	Potato	peroxisome, plasma membrane, vacuole	58.39	30.61
VIT_14s0068g02190.t01	Wine grape	plasma membrane	58.39	30.42
KRG94508	Soybean	plasma membrane	58.15	30.25
KRH57669	Soybean	plasma membrane	55.72	29.47
CDX67478	Canola	plasma membrane	54.74	29.22
Bra028478.1-P	Field mustard	plasma membrane	54.74	29.22
CDY11722	Canola	plasma membrane	54.5	29.09
Bra030328.1-P	Field mustard	plasma membrane	54.74	28.99
CDY15925	Canola	plasma membrane	54.74	28.99
CDX99630	Canola	plasma membrane	54.5	28.87
AT5G40890.1	Thale cress	plasma membrane	54.01	28.65
CDY13685	Canola	plasma membrane	54.26	28.48
Bra025253.1-P	Field mustard	plasma membrane	54.26	28.48
CDX83663	Canola	plasma membrane	54.01	28.35
CDY34173	Canola	plasma membrane	53.77	28.33
AT3G27170.1	Thale cress	plasma membrane	53.77	28.33
CDY28488	Canola	plasma membrane	53.77	28.22
Bra032985.1-P	Field mustard	plasma membrane	53.53	28.1
Solyc02g094060.2.1	Tomato	plasma membrane	51.09	27.52
PGSC0003DMT400052072	Potato	plasma membrane	51.34	27.26
HORVU3Hr1G081920.1	Barley	plasma membrane, plastid	40.63	21.14
HORVU2Hr1G077080.3	Barley	mitochondrion, peroxisome, plasma membrane, plastid	35.52	17.94
HORVU5Hr1G107380.2	Barley	plastid	30.17	14.67
HORVU0Hr1G040330.16	Barley	plasma membrane	11.92	8.33
VIT_00s0316g00020.t01	Wine grape	cytosol	0.24	1.19
VIT_14s0068g02330.t01	Wine grape	cytosol, extracellular	0.0	0.0

Protein Annotations

Gene3D:1.10.3080.10	MapMan:24.2.16	UniProt:A0A287E1Z1	InterPro:Cl-channel_core	InterPro:Cl-channel_volt-gated	InterPro:Cl_channel_pln
GO:GO:0003674	GO:GO:0005215	GO:GO:0005247	GO:GO:0005575	GO:GO:0006810	GO:GO:0006821
GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0055085	GO:GO:1902476	EnsemblPlantsGene:HORVU0Hr1G015220
EnsemblPlants:HORVU0Hr1G015220.3	InterPro:IPR014743	PFAM:PF00654	PRINTS:PR00762	PRINTS:PR01120	PANTHER:PTHR11689
PANTHER:PTHR11689:SF67	SUPFAM:SSF81340	TMHMM:TMhelix	UniParc:UPI000B46F87F	SEG:seg	:

Description

No Description!

Coordinates

chrchrUn:-:83418183..83419764

Molecular Weight (calculated)

41651.5 Da

IEP (calculated)

9.285

GRAVY (calculated)

0.119

Length

411 amino acids

Sequence
(BLAST)

001: NGAQFDRRTG MEEDQSPGLG LAGETPGLKH GNGVGSSPED PGSAGDGISS LEKPLLKRSN TLTSSHLAMV GAKVSHIESL DYEIIENDLF KHDWRSRSNV
101: EVLQYIFLKW SLAFLVGLLT GVIASLINLA IENISGLKML HMVQLVREKR YWAGFFYFSG INFVLTFIAA VLCVVFAPTA AGPGIPEIKA YLNGVDTPNM
201: FGAPQLIVKI IGSICAVSSG LDLGKEGPLV HIGACLANLL SQGGSGRFRL RWRWLRYFNN DRDRRDLITC GASSGVCAAF RSPVGGVLFA LEEVATWWRS
301: ALLWRTFFST ATVVVVLRGX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXLACCALM RPPAFFRCSF VFFWSIKINK KFHGNWTSFR MENLKSKKHV
401: ENNEWHWALG Q

Best Arabidopsis Sequence Match ( AT3G27170.1 )
(BLAST)

001: MVEEDLNQIG GNSNYNGEGG DPESNTLNQP LVKANRTLSS TPLALVGAKV SHIESLDYEI NENDLFKHDW RKRSKAQVLQ YVFLKWTLAC LVGLFTGLIA
101: TLINLAVENI AGYKLLAVGH FLTQERYVTG LMVLVGANLG LTLVASVLCV CFAPTAAGPG IPEIKAYLNG VDTPNMFGAT TMIVKIVGSI GAVAAGLDLG
201: KEGPLVHIGS CIASLLGQGG TDNHRIKWRW LRYFNNDRDR RDLITCGSAA GVCAAFRSPV GGVLFALEEV ATWWRSALLW RTFFSTAVVV VVLREFIEIC
301: NSGKCGLFGK GGLIMFDVSH VTYTYHVTDI IPVMLIGVIG GILGSLYNHL LHKVLRLYNL INEKGKIHKV LLSLTVSLFT SVCLYGLPFL AKCKPCDPSI
401: DEICPTNGRS GNFKQFHCPK GYYNDLATLL LTTNDDAVRN LFSSNTPNEF GMGSLWIFFV LYCILGLFTF GIATPSGLFL PIILMGAAYG RMLGAAMGSY
501: TSIDQGLYAV LGAAALMAGS MRMTVSLCVI FLELTNNLLL LPITMIVLLI AKTVGDSFNP SIYDIILHLK GLPFLEANPE PWMRNLTVGE LGDAKPPVVT
601: LQGVEKVSNI VDVLKNTTHN AFPVLDEAEV PQVGLATGAT ELHGLILRAH LVKVLKKRWF LTEKRRTEEW EVREKFPWDE LAEREDNFDD VAITSAEMEM
701: YVDLHPLTNT TPYTVMENMS VAKALVLFRQ VGLRHLLIVP KIQASGMCPV VGILTRQDLR AYNILQAFPL LEKSKGGKTH

Arabidopsis Description

CLC-BChloride channel protein [Source:UniProtKB/TrEMBL;Acc:A0A178VKG6]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.