Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- plasma membrane 4
- extracellular 1
- golgi 1
- endoplasmic reticulum 1
- vacuole 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra025253.1-P | Field mustard | plasma membrane | 93.08 | 92.72 |
| CDX83663 | Canola | plasma membrane | 92.95 | 92.59 |
| CDY13685 | Canola | plasma membrane | 92.95 | 92.59 |
| CDY34173 | Canola | plasma membrane | 92.18 | 92.18 |
| Bra032985.1-P | Field mustard | plasma membrane | 92.44 | 92.08 |
| CDY28488 | Canola | plasma membrane | 92.31 | 91.95 |
| AT5G40890.1 | Thale cress | plasma membrane | 87.69 | 88.26 |
| VIT_14s0068g02190.t01 | Wine grape | plasma membrane | 80.9 | 79.97 |
| KRG94508 | Soybean | plasma membrane | 79.62 | 78.61 |
| KRH06955 | Soybean | plasma membrane | 74.1 | 77.58 |
| Solyc02g068080.2.1 | Tomato | peroxisome, plasma membrane, vacuole | 77.82 | 77.42 |
| KRH57669 | Soybean | plasma membrane | 76.92 | 77.22 |
| PGSC0003DMT400017962 | Potato | peroxisome, plasma membrane, vacuole | 77.56 | 77.17 |
| GSMUA_Achr3P16100_001 | Banana | plasma membrane | 66.28 | 71.31 |
| Solyc02g094060.2.1 | Tomato | plasma membrane | 69.62 | 71.17 |
| PGSC0003DMT400052072 | Potato | plasma membrane | 70.51 | 71.06 |
| TraesCS6A01G098600.1 | Wheat | plasma membrane | 67.82 | 67.99 |
| TraesCS6B01G126800.1 | Wheat | plasma membrane | 67.69 | 67.35 |
| TraesCS6D01G084300.1 | Wheat | cytosol, nucleus, plasma membrane | 67.95 | 67.34 |
| TraesCS6B01G126400.1 | Wheat | plasma membrane | 67.95 | 67.34 |
| TraesCS6D01G084000.2 | Wheat | plasma membrane | 67.44 | 67.09 |
| EER90148 | Sorghum | plasma membrane | 67.69 | 65.92 |
| Zm00001d046919_P001 | Maize | plasma membrane | 67.56 | 65.79 |
| TraesCS6A01G098500.2 | Wheat | cytosol, peroxisome, plasma membrane | 65.9 | 64.57 |
| HORVU0Hr1G015220.3 | Barley | cytosol | 28.33 | 53.77 |
| AT5G33280.1 | Thale cress | plasma membrane | 52.69 | 53.73 |
| AT5G49890.1 | Thale cress | plasma membrane | 51.41 | 51.48 |
| Os12t0438600-01 | Rice | plasma membrane | 9.36 | 48.03 |
| AT5G26240.1 | Thale cress | plasma membrane | 41.92 | 41.29 |
Protein Annotations
| MapMan:24.2.16 | Gene3D:3.10.580.10 | EntrezGene:822336 | UniProt:A0A178VKG6 | ProteinID:AEE77275.1 | ArrayExpress:AT3G27170 |
| EnsemblPlantsGene:AT3G27170 | RefSeq:AT3G27170 | TAIR:AT3G27170 | RefSeq:AT3G27170-TAIR-G | EnsemblPlants:AT3G27170.1 | TAIR:AT3G27170.1 |
| EMBL:AY062518 | Unigene:At.15 | ProteinID:BAB01934.1 | InterPro:CBS_dom | Symbol:CLC-B | InterPro:Cl-channel_core |
| InterPro:Cl-channel_volt-gated | InterPro:Cl_channel_pln | GO:GO:0003674 | GO:GO:0005215 | GO:GO:0005216 | GO:GO:0005244 |
| GO:GO:0005247 | GO:GO:0005254 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005773 | GO:GO:0006810 | GO:GO:0006811 | GO:GO:0006821 |
| GO:GO:0008150 | GO:GO:0009671 | GO:GO:0009705 | GO:GO:0015706 | GO:GO:0016020 | GO:GO:0016021 |
| GO:GO:0034220 | GO:GO:0034707 | GO:GO:0034765 | GO:GO:0055085 | GO:GO:1902476 | GO:GO:1902600 |
| InterPro:IPR000644 | InterPro:IPR014743 | RefSeq:NP_189353.1 | ProteinID:OAP06274.1 | UniProt:P92942 | PFAM:PF00571 |
| PFAM:PF00654 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 |
| PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 |
| PO:PO:0007616 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009025 | PO:PO:0009030 | PO:PO:0009046 |
| PO:PO:0009047 | PO:PO:0020030 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PRINTS:PR00762 |
| PRINTS:PR01120 | PFscan:PS51371 | PANTHER:PTHR11689 | PANTHER:PTHR11689:SF67 | SMART:SM00116 | SUPFAM:SSF54631 |
| SUPFAM:SSF81340 | TMHMM:TMhelix | UniParc:UPI00000ACA63 | EMBL:Z71446 | SEG:seg | : |
Description
CLC-BChloride channel protein [Source:UniProtKB/TrEMBL;Acc:A0A178VKG6]
Coordinates
chr3:+:10023931..10027198
Molecular Weight (calculated)
85463.0 Da
IEP (calculated)
7.226
GRAVY (calculated)
0.305
Length
780 amino acids
Sequence
(BLAST)
(BLAST)
001: MVEEDLNQIG GNSNYNGEGG DPESNTLNQP LVKANRTLSS TPLALVGAKV SHIESLDYEI NENDLFKHDW RKRSKAQVLQ YVFLKWTLAC LVGLFTGLIA
101: TLINLAVENI AGYKLLAVGH FLTQERYVTG LMVLVGANLG LTLVASVLCV CFAPTAAGPG IPEIKAYLNG VDTPNMFGAT TMIVKIVGSI GAVAAGLDLG
201: KEGPLVHIGS CIASLLGQGG TDNHRIKWRW LRYFNNDRDR RDLITCGSAA GVCAAFRSPV GGVLFALEEV ATWWRSALLW RTFFSTAVVV VVLREFIEIC
301: NSGKCGLFGK GGLIMFDVSH VTYTYHVTDI IPVMLIGVIG GILGSLYNHL LHKVLRLYNL INEKGKIHKV LLSLTVSLFT SVCLYGLPFL AKCKPCDPSI
401: DEICPTNGRS GNFKQFHCPK GYYNDLATLL LTTNDDAVRN LFSSNTPNEF GMGSLWIFFV LYCILGLFTF GIATPSGLFL PIILMGAAYG RMLGAAMGSY
501: TSIDQGLYAV LGAAALMAGS MRMTVSLCVI FLELTNNLLL LPITMIVLLI AKTVGDSFNP SIYDIILHLK GLPFLEANPE PWMRNLTVGE LGDAKPPVVT
601: LQGVEKVSNI VDVLKNTTHN AFPVLDEAEV PQVGLATGAT ELHGLILRAH LVKVLKKRWF LTEKRRTEEW EVREKFPWDE LAEREDNFDD VAITSAEMEM
701: YVDLHPLTNT TPYTVMENMS VAKALVLFRQ VGLRHLLIVP KIQASGMCPV VGILTRQDLR AYNILQAFPL LEKSKGGKTH
101: TLINLAVENI AGYKLLAVGH FLTQERYVTG LMVLVGANLG LTLVASVLCV CFAPTAAGPG IPEIKAYLNG VDTPNMFGAT TMIVKIVGSI GAVAAGLDLG
201: KEGPLVHIGS CIASLLGQGG TDNHRIKWRW LRYFNNDRDR RDLITCGSAA GVCAAFRSPV GGVLFALEEV ATWWRSALLW RTFFSTAVVV VVLREFIEIC
301: NSGKCGLFGK GGLIMFDVSH VTYTYHVTDI IPVMLIGVIG GILGSLYNHL LHKVLRLYNL INEKGKIHKV LLSLTVSLFT SVCLYGLPFL AKCKPCDPSI
401: DEICPTNGRS GNFKQFHCPK GYYNDLATLL LTTNDDAVRN LFSSNTPNEF GMGSLWIFFV LYCILGLFTF GIATPSGLFL PIILMGAAYG RMLGAAMGSY
501: TSIDQGLYAV LGAAALMAGS MRMTVSLCVI FLELTNNLLL LPITMIVLLI AKTVGDSFNP SIYDIILHLK GLPFLEANPE PWMRNLTVGE LGDAKPPVVT
601: LQGVEKVSNI VDVLKNTTHN AFPVLDEAEV PQVGLATGAT ELHGLILRAH LVKVLKKRWF LTEKRRTEEW EVREKFPWDE LAEREDNFDD VAITSAEMEM
701: YVDLHPLTNT TPYTVMENMS VAKALVLFRQ VGLRHLLIVP KIQASGMCPV VGILTRQDLR AYNILQAFPL LEKSKGGKTH
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.