Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- plasma membrane 4
- extracellular 1
- golgi 1
- endoplasmic reticulum 1
- vacuole 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra028478.1-P | Field mustard | plasma membrane | 94.19 | 94.81 |
| CDX67478 | Canola | plasma membrane | 94.19 | 94.81 |
| Bra030328.1-P | Field mustard | plasma membrane | 94.84 | 94.72 |
| CDY11722 | Canola | plasma membrane | 94.06 | 94.68 |
| CDY15925 | Canola | plasma membrane | 94.71 | 94.59 |
| CDX99630 | Canola | plasma membrane | 94.45 | 94.33 |
| AT3G27170.1 | Thale cress | plasma membrane | 88.26 | 87.69 |
| VIT_14s0068g02190.t01 | Wine grape | plasma membrane | 80.26 | 78.83 |
| KRG94508 | Soybean | plasma membrane | 80.0 | 78.48 |
| KRH06955 | Soybean | plasma membrane | 74.84 | 77.85 |
| KRH57669 | Soybean | plasma membrane | 77.68 | 77.48 |
| Solyc02g068080.2.1 | Tomato | peroxisome, plasma membrane, vacuole | 77.16 | 76.28 |
| PGSC0003DMT400017962 | Potato | peroxisome, plasma membrane, vacuole | 76.9 | 76.02 |
| Solyc02g094060.2.1 | Tomato | plasma membrane | 70.06 | 71.17 |
| PGSC0003DMT400052072 | Potato | plasma membrane | 70.84 | 70.93 |
| GSMUA_Achr3P16100_001 | Banana | plasma membrane | 66.19 | 70.76 |
| TraesCS6A01G098600.1 | Wheat | plasma membrane | 67.61 | 67.35 |
| TraesCS6B01G126400.1 | Wheat | plasma membrane | 67.87 | 66.84 |
| TraesCS6D01G084300.1 | Wheat | cytosol, nucleus, plasma membrane | 67.74 | 66.71 |
| TraesCS6B01G126800.1 | Wheat | plasma membrane | 67.35 | 66.58 |
| TraesCS6D01G084000.2 | Wheat | plasma membrane | 67.23 | 66.45 |
| Zm00001d046919_P001 | Maize | plasma membrane | 67.87 | 65.67 |
| EER90148 | Sorghum | plasma membrane | 67.87 | 65.67 |
| TraesCS6A01G098500.2 | Wheat | cytosol, peroxisome, plasma membrane | 65.94 | 64.2 |
| HORVU0Hr1G015220.3 | Barley | cytosol | 28.65 | 54.01 |
| AT5G33280.1 | Thale cress | plasma membrane | 52.77 | 53.46 |
| AT5G49890.1 | Thale cress | plasma membrane | 50.97 | 50.71 |
| Os12t0438600-01 | Rice | plasma membrane | 9.81 | 50.0 |
| AT5G26240.1 | Thale cress | plasma membrane | 41.94 | 41.04 |
Protein Annotations
| MapMan:24.2.16 | Gene3D:3.10.580.10 | EntrezGene:834090 | ProteinID:AED94612.1 | ProteinID:AED94613.1 | EMBL:AF044313 |
| ArrayExpress:AT5G40890 | EnsemblPlantsGene:AT5G40890 | RefSeq:AT5G40890 | TAIR:AT5G40890 | RefSeq:AT5G40890-TAIR-G | EnsemblPlants:AT5G40890.1 |
| TAIR:AT5G40890.1 | Symbol:ATCLC-A | EMBL:AY059791 | EMBL:AY150506 | Unigene:At.25457 | ProteinID:BAB11351.1 |
| InterPro:CBS_dom | InterPro:Cl-channel_core | InterPro:Cl-channel_volt-gated | InterPro:Cl_channel_pln | GO:GO:0003674 | GO:GO:0005215 |
| GO:GO:0005216 | GO:GO:0005244 | GO:GO:0005247 | GO:GO:0005254 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005773 | GO:GO:0006810 |
| GO:GO:0006811 | GO:GO:0006821 | GO:GO:0008150 | GO:GO:0009671 | GO:GO:0009705 | GO:GO:0010167 |
| GO:GO:0015112 | GO:GO:0015706 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0034220 | GO:GO:0034707 |
| GO:GO:0034765 | GO:GO:0055085 | GO:GO:1902476 | GO:GO:1902600 | InterPro:IPR000644 | InterPro:IPR014743 |
| RefSeq:NP_001031990.1 | RefSeq:NP_198905.1 | UniProt:P92941 | PFAM:PF00571 | PFAM:PF00654 | PO:PO:0000013 |
| PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 |
| PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 |
| PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 |
| PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 |
| PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 |
| PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PRINTS:PR00762 |
| PRINTS:PR01120 | PFscan:PS51371 | PANTHER:PTHR11689 | PANTHER:PTHR11689:SF67 | SMART:SM00116 | SUPFAM:SSF54631 |
| SUPFAM:SSF81340 | TMHMM:TMhelix | UniParc:UPI00000AC430 | EMBL:Z71445 | SEG:seg | : |
Description
CLC-AChloride channel protein CLC-a [Source:UniProtKB/Swiss-Prot;Acc:P92941]
Coordinates
chr5:-:16381316..16385424
Molecular Weight (calculated)
85411.3 Da
IEP (calculated)
7.247
GRAVY (calculated)
0.245
Length
775 amino acids
Sequence
(BLAST)
(BLAST)
001: MDEDGNLQIS NSNYNGEEEG EDPENNTLNQ PLLKRHRTLS STPLALVGAK VSHIESLDYE INENDLFKHD WRSRSKAQVF QYIFLKWTLA CLVGLFTGLI
101: ATLINLAVEN IAGYKLLAVG YYIAQDRFWT GLMVFTGANL GLTLVATVLV VYFAPTAAGP GIPEIKAYLN GIDTPNMFGF TTMMVKIVGS IGAVAAGLDL
201: GKEGPLVHIG SCIASLLGQG GPDNHRIKWR WLRYFNNDRD RRDLITCGSA SGVCAAFRSP VGGVLFALEE VATWWRSALL WRTFFSTAVV VVVLRAFIEI
301: CNSGKCGLFG SGGLIMFDVS HVEVRYHAAD IIPVTLIGVF GGILGSLYNH LLHKVLRLYN LINQKGKIHK VLLSLGVSLF TSVCLFGLPF LAECKPCDPS
401: IDEICPTNGR SGNFKQFNCP NGYYNDLSTL LLTTNDDAVR NIFSSNTPNE FGMVSLWIFF GLYCILGLIT FGIATPSGLF LPIILMGSAY GRMLGTAMGS
501: YTNIDQGLYA VLGAASLMAG SMRMTVSLCV IFLELTNNLL LLPITMFVLL IAKTVGDSFN LSIYEIILHL KGLPFLEANP EPWMRNLTVG ELNDAKPPVV
601: TLNGVEKVAN IVDVLRNTTH NAFPVLDGAD QNTGTELHGL ILRAHLVKVL KKRWFLNEKR RTEEWEVREK FTPVELAERE DNFDDVAITS SEMQLYVDLH
701: PLTNTTPYTV VQSMSVAKAL VLFRSVGLRH LLVVPKIQAS GMSPVIGILT RQDLRAYNIL QAFPHLDKHK SGKAR
101: ATLINLAVEN IAGYKLLAVG YYIAQDRFWT GLMVFTGANL GLTLVATVLV VYFAPTAAGP GIPEIKAYLN GIDTPNMFGF TTMMVKIVGS IGAVAAGLDL
201: GKEGPLVHIG SCIASLLGQG GPDNHRIKWR WLRYFNNDRD RRDLITCGSA SGVCAAFRSP VGGVLFALEE VATWWRSALL WRTFFSTAVV VVVLRAFIEI
301: CNSGKCGLFG SGGLIMFDVS HVEVRYHAAD IIPVTLIGVF GGILGSLYNH LLHKVLRLYN LINQKGKIHK VLLSLGVSLF TSVCLFGLPF LAECKPCDPS
401: IDEICPTNGR SGNFKQFNCP NGYYNDLSTL LLTTNDDAVR NIFSSNTPNE FGMVSLWIFF GLYCILGLIT FGIATPSGLF LPIILMGSAY GRMLGTAMGS
501: YTNIDQGLYA VLGAASLMAG SMRMTVSLCV IFLELTNNLL LLPITMFVLL IAKTVGDSFN LSIYEIILHL KGLPFLEANP EPWMRNLTVG ELNDAKPPVV
601: TLNGVEKVAN IVDVLRNTTH NAFPVLDGAD QNTGTELHGL ILRAHLVKVL KKRWFLNEKR RTEEWEVREK FTPVELAERE DNFDDVAITS SEMQLYVDLH
701: PLTNTTPYTV VQSMSVAKAL VLFRSVGLRH LLVVPKIQAS GMSPVIGILT RQDLRAYNIL QAFPHLDKHK SGKAR
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.