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Wheat
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Wheat
Subcellular Localization
min:
: max

 
Winner_takes_all: peroxisome, cytosol, plasma membrane

Predictor Summary:
  • cytosol 1
  • mitochondrion 1
  • plasma membrane 1
  • peroxisome 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, peroxisome, plasma membrane
Any Predictor:cytosol, peroxisome, plasma membrane
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:plasma membrane
YLoc:peroxisome
PPI

Inferred distinct locusB in Crop

locusBlocations
TraesCS1A01G340600.1
TraesCS1D01G342600.1
TraesCS2A01G346700.1
TraesCS2B01G365000.1
TraesCS2D01G345400.1
TraesCS3A01G274800.1
TraesCS3A01G313000.1
TraesCS3B01G158900.1
TraesCS3B01G308400.1
TraesCS3D01G141300.1
TraesCS3D01G274500.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT5G40890.1 TraesCS2A01G346700.1 AT1G27300.1 21798944
AT5G40890.1 TraesCS2B01G365000.1 AT1G27300.1 21798944
AT5G40890.1 TraesCS2D01G345400.1 AT1G27300.1 21798944
AT5G40890.1 TraesCS1A01G340600.1 AT3G16310.1 21798944
AT5G40890.1 TraesCS1D01G342600.1 AT3G16310.1 21798944
AT5G40890.1 TraesCS3A01G274800.1 AT3G16310.1 21798944
AT5G40890.1 TraesCS3A01G313000.1 AT3G16310.1 21798944
AT5G40890.1 TraesCS3B01G158900.1 AT3G16310.1 21798944
AT5G40890.1 TraesCS3B01G308400.1 AT3G16310.1 21798944
AT5G40890.1 TraesCS3D01G141300.1 AT3G16310.1 21798944
AT5G40890.1 TraesCS3D01G274500.1 AT3G16310.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS6D01G084300.1 Wheat cytosol, nucleus, plasma membrane 94.85 95.93
TraesCS6B01G126400.1 Wheat plasma membrane 94.6 95.68
TraesCS6A01G098600.1 Wheat plasma membrane 89.95 92.03
EER90148 Sorghum plasma membrane 83.79 83.27
Zm00001d046919_P001 Maize plasma membrane 82.91 82.4
HORVU0Hr1G015220.3 Barley cytosol 41.21 79.81
Os12t0438600-01 Rice plasma membrane 14.7 76.97
GSMUA_Achr3P16100_001 Banana plasma membrane 64.45 70.76
KRH06955 Soybean plasma membrane 63.44 67.79
VIT_14s0068g02190.t01 Wine grape plasma membrane 66.83 67.43
PGSC0003DMT400017962 Potato peroxisome, plasma membrane, vacuole 66.33 67.35
Solyc02g068080.2.1 Tomato peroxisome, plasma membrane, vacuole 66.21 67.22
CDX67478 Canola plasma membrane 64.7 66.88
Bra028478.1-P Field mustard plasma membrane 64.7 66.88
CDY11722 Canola plasma membrane 64.57 66.75
CDY15925 Canola plasma membrane 64.57 66.24
Bra030328.1-P Field mustard plasma membrane 64.57 66.24
KRG94508 Soybean plasma membrane 65.58 66.08
AT5G40890.1 Thale cress plasma membrane 64.2 65.94
Bra025253.1-P Field mustard plasma membrane 64.82 65.9
CDY13685 Canola plasma membrane 64.82 65.9
AT3G27170.1 Thale cress plasma membrane 64.57 65.9
KRH57669 Soybean plasma membrane 64.32 65.89
CDX83663 Canola plasma membrane 64.7 65.77
CDY34173 Canola plasma membrane 64.45 65.77
CDX99630 Canola plasma membrane 64.07 65.72
Bra032985.1-P Field mustard plasma membrane 64.2 65.26
CDY28488 Canola plasma membrane 64.2 65.26
Solyc02g094060.2.1 Tomato plasma membrane 59.67 62.25
PGSC0003DMT400052072 Potato plasma membrane 60.43 62.14
VIT_14s0068g02330.t01 Wine grape cytosol, extracellular 5.9 57.32
VIT_00s0316g00020.t01 Wine grape cytosol 6.03 57.14
TraesCS2A01G309900.1 Wheat plasma membrane 50.63 50.25
TraesCS3A01G125300.1 Wheat cytosol, nucleus, plasma membrane 48.99 48.45
TraesCS5A01G449500.2 Wheat plasma membrane 45.35 47.94
TraesCS3A01G390100.1 Wheat plasma membrane, plastid 47.11 47.17
TraesCS2A01G517500.3 Wheat plasma membrane 48.12 46.59
TraesCS4A01G277600.2 Wheat plasma membrane 38.82 38.34
Protein Annotations
Gene3D:1.10.3080.10MapMan:24.2.16Gene3D:3.10.580.10InterPro:CBS_domInterPro:Cl-channel_coreInterPro:Cl-channel_volt-gated
InterPro:Cl_channel_plnGO:GO:0003674GO:GO:0005215GO:GO:0005247GO:GO:0005575GO:GO:0006810
GO:GO:0006821GO:GO:0008150GO:GO:0016020GO:GO:0055085InterPro:IPR000644InterPro:IPR014743
PFAM:PF00654PRINTS:PR00762PRINTS:PR01120PFscan:PS51371PANTHER:PTHR11689PANTHER:PTHR11689:SF67
SUPFAM:SSF54631SUPFAM:SSF81340TMHMM:TMhelixEnsemblPlantsGene:TraesCS6A01G098500EnsemblPlants:TraesCS6A01G098500.2TIGR:cd03685
TIGR:cd04591SEG:seg::::
Description
No Description!
Coordinates
chr6A:-:65681840..65684520
Molecular Weight (calculated)
86874.6 Da
IEP (calculated)
7.602
GRAVY (calculated)
0.373
Length
796 amino acids
Sequence
(BLAST)
001: MEEDQSPGLG LAGETPGLKH GNGVGDSPED PAGSAGDGIS SLEKPLLKRS NTLTSSHLAM VGAKVSHIES LDYEIIENDL FKHDWRSRSN VEVLQYIFLK
101: WSLAFLVGLL TGVIASLINL AIENISGLKM LHMVHLVREK RYWAGFFYFS GFNFVLTFIA AVLCVVFAPT AAGPGIPEIK AYLNGVDTPN MFGAPQLIVK
201: IIGSICAVSS GLDLGKEGPL VHIGACLANL LSQGGSGRFR LRWRWLRYFN NDRDRRDLIT CGASSGVCAA FRSPVGGVLF ALEEVATWWR SALLWRTFFS
301: TATVVVVLRG FIEVCRGGRC GLFGEGGLII FDVSDVTVRY RLGDLLLVTL VGVIGGVLGA LYNHVLHMVL RLYNLINDKG RMAKLALALA VCVFTSAGLY
401: VLPFAVPCTP CDPAFGAACP ATGRSGNFKQ FNCPAGQYND LATLLHATNV DATRNIFSTG TPGEFRLDSL LIFFAIYCVL GLFTFGIAVP SGLFLPIILM
501: GAAYGRIVAL VLQSTVAASI DHGLYAVLGA AALMSGSMRM TVSLCVIFLE LTNNLLLLPM TMFVLLIAKT VGDAFNPSIY EIILDLKGLP FLEPKPEPWM
601: KDLTVGELAA AKPRTISLQV VEKVSTVLEV LRNTGHNGFP VVDRPRPGLS ELHGLVLRSH LVAVLRKRWF LLEKRRTEEW EARERFSSVE LADKNCKMDD
701: LELTPEELEM YIDLHPFTNT TPYTVVETMS VAKAVVLFRS VALRHMLIMP KYQGPEVSPK STPMAFQASS NCSCTFGFGF DDGSILVCRY LRLWGS
Best Arabidopsis Sequence Match ( AT3G27170.1 )
(BLAST)
001: MVEEDLNQIG GNSNYNGEGG DPESNTLNQP LVKANRTLSS TPLALVGAKV SHIESLDYEI NENDLFKHDW RKRSKAQVLQ YVFLKWTLAC LVGLFTGLIA
101: TLINLAVENI AGYKLLAVGH FLTQERYVTG LMVLVGANLG LTLVASVLCV CFAPTAAGPG IPEIKAYLNG VDTPNMFGAT TMIVKIVGSI GAVAAGLDLG
201: KEGPLVHIGS CIASLLGQGG TDNHRIKWRW LRYFNNDRDR RDLITCGSAA GVCAAFRSPV GGVLFALEEV ATWWRSALLW RTFFSTAVVV VVLREFIEIC
301: NSGKCGLFGK GGLIMFDVSH VTYTYHVTDI IPVMLIGVIG GILGSLYNHL LHKVLRLYNL INEKGKIHKV LLSLTVSLFT SVCLYGLPFL AKCKPCDPSI
401: DEICPTNGRS GNFKQFHCPK GYYNDLATLL LTTNDDAVRN LFSSNTPNEF GMGSLWIFFV LYCILGLFTF GIATPSGLFL PIILMGAAYG RMLGAAMGSY
501: TSIDQGLYAV LGAAALMAGS MRMTVSLCVI FLELTNNLLL LPITMIVLLI AKTVGDSFNP SIYDIILHLK GLPFLEANPE PWMRNLTVGE LGDAKPPVVT
601: LQGVEKVSNI VDVLKNTTHN AFPVLDEAEV PQVGLATGAT ELHGLILRAH LVKVLKKRWF LTEKRRTEEW EVREKFPWDE LAEREDNFDD VAITSAEMEM
701: YVDLHPLTNT TPYTVMENMS VAKALVLFRQ VGLRHLLIVP KIQASGMCPV VGILTRQDLR AYNILQAFPL LEKSKGGKTH
Arabidopsis Description
CLC-BChloride channel protein [Source:UniProtKB/TrEMBL;Acc:A0A178VKG6]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.