Factsheet for GSMUA_Achr3P16100_001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
plasma membrane 5
extracellular 1
endoplasmic reticulum 1
vacuole 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	plasma membrane
Plant-mPloc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr4P08270_001
GSMUA_Achr4P10230_001
GSMUA_Achr4P15460_001
GSMUA_Achr6P14800_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G40890.1	GSMUA_Achr4P08270_001	AT3G16310.1	21798944
AT5G40890.1	GSMUA_Achr4P15460_001	AT3G16310.1	21798944
AT5G40890.1	GSMUA_Achr6P14800_001	AT3G16310.1	21798944
AT5G40890.1	GSMUA_Achr4P10230_001	AT4G19030.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_14s0068g02190.t01	Wine grape	plasma membrane	75.86	69.71
TraesCS6A01G098600.1	Wheat	plasma membrane	73.52	68.51
TraesCS6B01G126800.1	Wheat	plasma membrane	73.93	68.37
PGSC0003DMT400017962	Potato	peroxisome, plasma membrane, vacuole	73.93	68.37
Solyc02g068080.2.1	Tomato	peroxisome, plasma membrane, vacuole	73.79	68.24
TraesCS6D01G084000.2	Wheat	plasma membrane	73.66	68.11
TraesCS6D01G084300.1	Wheat	cytosol, nucleus, plasma membrane	73.52	67.73
TraesCS6B01G126400.1	Wheat	plasma membrane	73.52	67.73
Zm00001d046919_P001	Maize	plasma membrane	74.34	67.29
EER90148	Sorghum	plasma membrane	74.34	67.29
KRG94508	Soybean	plasma membrane	72.69	66.71
KRH57669	Soybean	plasma membrane	71.17	66.41
AT3G27170.1	Thale cress	plasma membrane	71.31	66.28
AT5G40890.1	Thale cress	plasma membrane	70.76	66.19
Bra028478.1-P	Field mustard	plasma membrane	70.21	66.1
CDY11722	Canola	plasma membrane	70.21	66.1
Bra030328.1-P	Field mustard	plasma membrane	70.62	65.98
CDY15925	Canola	plasma membrane	70.62	65.98
CDX67478	Canola	plasma membrane	70.07	65.97
CDX83663	Canola	plasma membrane	71.03	65.77
Bra025253.1-P	Field mustard	plasma membrane	70.9	65.64
CDY13685	Canola	plasma membrane	70.9	65.64
CDY34173	Canola	plasma membrane	70.62	65.64
CDX99630	Canola	plasma membrane	70.21	65.59
CDY28488	Canola	plasma membrane	70.62	65.39
Bra032985.1-P	Field mustard	plasma membrane	70.48	65.26
KRH06955	Soybean	plasma membrane	67.03	65.23
TraesCS6A01G098500.2	Wheat	cytosol, peroxisome, plasma membrane	70.76	64.45
Solyc02g094060.2.1	Tomato	plasma membrane	67.45	64.09
PGSC0003DMT400052072	Potato	plasma membrane	68.14	63.82
HORVU0Hr1G015220.3	Barley	cytosol	31.45	55.47
GSMUA_Achr6P24170_001	Banana	plasma membrane	54.9	54.75
GSMUA_Achr6P07410_001	Banana	plasma membrane	55.31	52.35
GSMUA_Achr6P02920_001	Banana	plasma membrane	51.86	49.74
GSMUA_Achr8P08450_001	Banana	plasma membrane	54.21	49.5
GSMUA_Achr5P23490_001	Banana	plasma membrane	53.52	49.36
GSMUA_Achr3P13250_001	Banana	cytosol, peroxisome, plasma membrane	50.34	46.85
GSMUA_Achr1P26050_001	Banana	plasma membrane	49.79	46.76
GSMUA_Achr3P21820_001	Banana	plasma membrane	55.72	45.04
Os12t0438600-01	Rice	plasma membrane	9.38	44.74
GSMUA_Achr4P06890_001	Banana	plasma membrane	39.03	41.62
GSMUA_Achr4P06880_001	Banana	cytosol	4.97	39.13
VIT_00s0316g00020.t01	Wine grape	cytosol	4.0	34.52
VIT_14s0068g02330.t01	Wine grape	cytosol, extracellular	3.86	34.15
GSMUA_Achr7P27080_001	Banana	mitochondrion, plasma membrane	11.86	30.5

Protein Annotations

MapMan:24.2.16	Gene3D:3.10.580.10	InterPro:CBS_dom	InterPro:Cl-channel_core	InterPro:Cl-channel_volt-gated	InterPro:Cl_channel_pln
GO:GO:0003674	GO:GO:0005215	GO:GO:0005216	GO:GO:0005247	GO:GO:0005575	GO:GO:0006810
GO:GO:0006811	GO:GO:0006821	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0034220
GO:GO:0055085	GO:GO:1902476	EnsemblPlantsGene:GSMUA_Achr3G16100_001	EnsemblPlants:GSMUA_Achr3P16100_001	EnsemblPlants:GSMUA_Achr3T16100_001	InterPro:IPR000644
InterPro:IPR014743	UniProt:M0SF26	PFAM:PF00571	PFAM:PF00654	PRINTS:PR00762	PRINTS:PR01120
PFscan:PS51371	PANTHER:PTHR11689	PANTHER:PTHR11689:SF67	SMART:SM00116	SUPFAM:SSF54631	SUPFAM:SSF81340
TMHMM:TMhelix	UniParc:UPI000296EADF	SEG:seg	:	:	:

Description

Chloride channel protein CLC-b [Source:GMGC_GENE;Acc:GSMUA_Achr3G16100_001]

Coordinates

chr3:-:17227242..17230367

Molecular Weight (calculated)

79141.2 Da

IEP (calculated)

8.919

GRAVY (calculated)

0.372

Length

725 amino acids

Sequence
(BLAST)

001: MVGAKVSHIE SLDYEINEND LFKHDWRSRS STEVLQYIFL KWTLAFLVGL LTGVTASLIN LAIENIAGIK MLYLARFVKD QRILVAGVCR YITGFVYLAG
101: VNLALTTVAA SLCVVFAPTA AGPGIPEIKA YLNGVDTPNM FGVSTLVVKI IGSIGSVSAG LDLGKEGPLV HIGACFASLL GQGGSENYRL RWKWLRYFKN
201: DRDRRDLITC GASSGVCAAF RSPVGGVLFA LEEVATWWRS ALLWRTFFST AVVVVVLRGF IEYCNSGRCG LFGRGGLILF DVSDVTVTYH VNDLLPVALV
301: GVLGGLLGSL YNYVLHKILR VYSLINERGR MAKLLLSLAV SLFTSVCLYC LPFLAPCTPC DPSSETICPT PEGSGNFKQF NCPNGYYNDL ASLLYATNDD
401: AVRNIFSTST PNEFRSISLL IFFALYCVLG LVTFGIAVPS GLFLPIILMG SAYGRLLALA LRSFIHIDQG LYAVLGAAAL MSGSMRMTVS LCVIFLELTN
501: NLLLLPITIP EPWMRNLTVG ELAAAKPRIV SLRGIERVAR VVDVLKHTSH NGFPVVDQGA PSSPAGTTEL HGLVLRAHLV AVLSKKWFLK ERRRTAEWEV
601: RAAFTSVDLA EKGQKVEHVK LTEEEMDMYV DLHPFTNTTP YTVVESMSVA KAVVLFRQVG LRHLLVIPKY QGAGISPVVG ILTRQDLRAH NILGAFPHLA
701: NKRGEEGRSK KGEVGKSAES CVGRK

Best Arabidopsis Sequence Match ( AT3G27170.1 )
(BLAST)

001: MVEEDLNQIG GNSNYNGEGG DPESNTLNQP LVKANRTLSS TPLALVGAKV SHIESLDYEI NENDLFKHDW RKRSKAQVLQ YVFLKWTLAC LVGLFTGLIA
101: TLINLAVENI AGYKLLAVGH FLTQERYVTG LMVLVGANLG LTLVASVLCV CFAPTAAGPG IPEIKAYLNG VDTPNMFGAT TMIVKIVGSI GAVAAGLDLG
201: KEGPLVHIGS CIASLLGQGG TDNHRIKWRW LRYFNNDRDR RDLITCGSAA GVCAAFRSPV GGVLFALEEV ATWWRSALLW RTFFSTAVVV VVLREFIEIC
301: NSGKCGLFGK GGLIMFDVSH VTYTYHVTDI IPVMLIGVIG GILGSLYNHL LHKVLRLYNL INEKGKIHKV LLSLTVSLFT SVCLYGLPFL AKCKPCDPSI
401: DEICPTNGRS GNFKQFHCPK GYYNDLATLL LTTNDDAVRN LFSSNTPNEF GMGSLWIFFV LYCILGLFTF GIATPSGLFL PIILMGAAYG RMLGAAMGSY
501: TSIDQGLYAV LGAAALMAGS MRMTVSLCVI FLELTNNLLL LPITMIVLLI AKTVGDSFNP SIYDIILHLK GLPFLEANPE PWMRNLTVGE LGDAKPPVVT
601: LQGVEKVSNI VDVLKNTTHN AFPVLDEAEV PQVGLATGAT ELHGLILRAH LVKVLKKRWF LTEKRRTEEW EVREKFPWDE LAEREDNFDD VAITSAEMEM
701: YVDLHPLTNT TPYTVMENMS VAKALVLFRQ VGLRHLLIVP KIQASGMCPV VGILTRQDLR AYNILQAFPL LEKSKGGKTH

Arabidopsis Description

CLC-BChloride channel protein [Source:UniProtKB/TrEMBL;Acc:A0A178VKG6]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.