Factsheet for GSMUA_Achr1P26050_001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
plasma membrane 3
extracellular 1
golgi 1
endoplasmic reticulum 1
vacuole 1
plastid 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	nucleus, peroxisome, plastid, secretory
BaCelLo:	nucleus
MultiLoc:	plasma membrane
PProwler:	secretory
TargetP:	plastid
WoLF PSORT:	plasma membrane
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P13250_001	Banana	cytosol, peroxisome, plasma membrane	83.68	82.93
GSMUA_Achr6P02920_001	Banana	plasma membrane	64.9	66.27
GSMUA_Achr5P23490_001	Banana	plasma membrane	67.1	65.9
Os08t0300300-01	Rice	plasma membrane	67.62	65.58
TraesCS5A01G449500.2	Wheat	plasma membrane	63.6	65.21
TraesCS5B01G457100.1	Wheat	plasma membrane	66.06	64.39
EES06435	Sorghum	plasma membrane	66.06	64.31
TraesCS5D01G456000.1	Wheat	plasma membrane	65.67	64.02
Zm00001d015702_P001	Maize	plasma membrane	52.98	63.12
PGSC0003DMT400078919	Potato	plasma membrane	60.88	61.28
VIT_11s0118g00220.t01	Wine grape	plasma membrane	61.01	61.01
Solyc07g007690.2.1	Tomato	plasma membrane	61.27	60.03
AT5G33280.1	Thale cress	plasma membrane	59.46	60.0
GSMUA_Achr6P24170_001	Banana	plasma membrane	56.35	59.83
CDY12393	Canola	plasma membrane	58.81	59.42
Bra038948.1-P	Field mustard	plasma membrane	58.81	59.42
KRH20183	Soybean	plasma membrane	58.81	59.35
CDY47559	Canola	plasma membrane	58.68	59.29
Zm00001d015700_P001	Maize	plasma membrane	16.71	58.64
GSMUA_Achr6P07410_001	Banana	plasma membrane	56.61	57.05
HORVU5Hr1G107380.2	Barley	plastid	59.72	54.56
GSMUA_Achr8P08450_001	Banana	plasma membrane	55.83	54.28
GSMUA_Achr3P16100_001	Banana	plasma membrane	46.76	49.79
GSMUA_Achr3P21820_001	Banana	plasma membrane	57.38	49.39
GSMUA_Achr4P06880_001	Banana	cytosol	4.66	39.13
GSMUA_Achr4P06890_001	Banana	plasma membrane	33.94	38.53
GSMUA_Achr7P27080_001	Banana	mitochondrion, plasma membrane	10.88	29.79

Protein Annotations

Gene3D:1.10.3080.10	MapMan:24.2.16	Gene3D:3.10.580.10	InterPro:CBS_dom	InterPro:Cl-channel_core	InterPro:Cl-channel_volt-gated
InterPro:Cl_channel_pln	GO:GO:0003674	GO:GO:0005215	GO:GO:0005216	GO:GO:0005247	GO:GO:0005575
GO:GO:0006810	GO:GO:0006811	GO:GO:0006821	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021
GO:GO:0034220	GO:GO:0055085	GO:GO:1902476	EnsemblPlantsGene:GSMUA_Achr1G26050_001	EnsemblPlants:GSMUA_Achr1P26050_001	EnsemblPlants:GSMUA_Achr1T26050_001
InterPro:IPR000644	InterPro:IPR014743	UniProt:M0S362	PFAM:PF00571	PFAM:PF00654	PRINTS:PR00762
PRINTS:PR01120	PFscan:PS51371	PANTHER:PTHR11689	PANTHER:PTHR11689:SF66	SMART:SM00116	SUPFAM:SSF54631
SUPFAM:SSF81340	TMHMM:TMhelix	UniParc:UPI000294F4CF	SEG:seg	:	:

Description

Putative chloride channel-like protein CLC-g [Source:GMGC_GENE;Acc:GSMUA_Achr1G26050_001]

Coordinates

chr1:+:20652954..20655828

Molecular Weight (calculated)

83997.4 Da

IEP (calculated)

8.905

GRAVY (calculated)

0.249

Length

772 amino acids

Sequence
(BLAST)

001: MATAAQVDEQ ELPPPRSSSS SEVMEQQRGN VREPLLEHSP IDLRRQAANT TSQGAIVGSN LCPIESLDYE LIENDVLNQD WRSRGRAAIL QYVFLKWTFC
101: LFIGILAGAV GFFNNLAVEN IAGRKFVTVS KFMLANKYWT AFWVFAGSNL TLLTFATAIT AFVSTAAGGS GIPEVKAYLN GVDAPDIFSL RTLVVKIVGT
201: IAAVSSSLHV GKADPMVHIG ACIGAMVGQG GSRKYRMTCR WLRYFKNDRD RRDLVTCGAA AGVAAALRAP VGGVLFALES LSSWWRSALI WRAFFATAVV
301: AVTLRALTDI CGRGNCGLYW KGGLITYDVT ADTVAYRLAD LPPVILLGVI GGVLGSLYNV LMVKVLHVCS PVNERGRAHR LLLAAAVSIC ISCCLFGLPW
401: LAPCRPCSNK DCSTVAHPGG FKNFQCPPDH YNDLASLFFN TNDDTIRKLY GRGTNDDFQK SSIMVAFAAS YVLGILSYGV VAAPFGFFVP IMLTGASYGR
501: LVGMAMGSDT NLDHGLFAVL GSASFLGGTM RMTVSVCVIM LELTNDLLLK GLPYLDDHAE PYMRHLTVGD VVAGPLRTFN GVEKVGNVVH ILKTTGHHAF
601: PVIDEPPFSS SPVLYGLVLR AHLLSLLKKK RFLPTRSVAG LDAAGQFGAD ELGKRGSGKH DRVEDVEVSA EEMEMFVDLH PFTNSSPYTV VETMSLAKAL
701: ILFREMGLRH LLIVPKSSSR APVVGILTRH DFMAEHILGL HPFLRKSRWK RLRFQGATLR RLCRACLTWA SS

Best Arabidopsis Sequence Match ( AT5G33280.1 )
(BLAST)

001: MPNSTTEDSV AVPLLPSLRR ATNSTSQVAI VGANVCPIES LDYEIAENDF FKQDWRGRSK VEIFQYVFMK WLLCFCIGII VSLIGFANNL AVENLAGVKF
101: VVTSNMMIAG RFAMGFVVFS VTNLILTLFA SVITAFVAPA AAGSGIPEVK AYLNGVDAPE IFSLRTLIIK IIGNISAVSA SLLIGKAGPM VHTGACVASI
201: LGQGGSKRYR LTWRWLRFFK NDRDRRDLVT CGAAAGIAAS FRAPVGGVLF ALEEMSSWWR SALLWRIFFS TAVVAIVLRA LIDVCLSGKC GLFGKGGLIM
301: FDVYSENASY HLGDVLPVLL LGVVGGILGS LYNFLLDKVL RAYNYIYEKG VTWKILLACA ISIFTSCLLF GLPFLASCQP CPVDALEECP TIGRSGNFKK
401: YQCPPGHYND LASLIFNTND DAIKNLFSKN TDFEFHYFSV LVFFVTCFFL SIFSYGIVAP AGLFVPVIVT GASYGRFVGM LLGSNSNLNH GLFAVLGAAS
501: FLGGTMRMTV STCVILLELT NNLLLLPMMM VVLLISKTVA DGFNANIYNL IMKLKGFPYL YSHAEPYMRQ LLVGDVVTGP LQVFNGIEKV ETIVHVLKTT
601: NHNGFPVVDG PPLAAAPVLH GLILRAHILT LLKKRVFMPS PVACDSNTLS QFKAEEFAKK GSGRSDKIED VELSEEELNM YLDLHPFSNA SPYTVVETMS
701: LAKALILFRE VGIRHLLVIP KTSNRPPVVG ILTRHDFMPE HILGLHPSVS RSKWKRLRIR LPFFS

Arabidopsis Description

CLC-GPutative chloride channel-like protein CLC-g [Source:UniProtKB/Swiss-Prot;Acc:P60300]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.