Factsheet for GSMUA_Achr3P13250_001

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, cytosol, plasma membrane

Predictor Summary:

cytosol 2
plasma membrane 2
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr1P26050_001	Banana	plasma membrane	82.93	83.68
GSMUA_Achr6P02920_001	Banana	plasma membrane	68.93	71.03
GSMUA_Achr5P23490_001	Banana	plasma membrane	71.37	70.74
Os08t0300300-01	Rice	plasma membrane	70.22	68.72
TraesCS5A01G449500.2	Wheat	plasma membrane	64.7	66.93
EES06435	Sorghum	plasma membrane	67.78	66.58
TraesCS5B01G457100.1	Wheat	plasma membrane	67.27	66.16
TraesCS5D01G456000.1	Wheat	plasma membrane	67.01	65.91
PGSC0003DMT400078919	Potato	plasma membrane	64.44	65.45
Zm00001d015702_P001	Maize	plasma membrane	54.3	65.28
VIT_11s0118g00220.t01	Wine grape	plasma membrane	64.18	64.77
Solyc07g007690.2.1	Tomato	plasma membrane	64.96	64.21
KRH20183	Soybean	plasma membrane	62.13	63.27
AT5G33280.1	Thale cress	plasma membrane	62.0	63.14
Bra038948.1-P	Field mustard	plasma membrane	61.36	62.57
CDY12393	Canola	plasma membrane	61.36	62.57
CDY47559	Canola	plasma membrane	61.23	62.43
Zm00001d015700_P001	Maize	plasma membrane	17.46	61.82
GSMUA_Achr6P24170_001	Banana	plasma membrane	57.38	61.49
GSMUA_Achr6P07410_001	Banana	plasma membrane	57.64	58.62
HORVU5Hr1G107380.2	Barley	plastid	60.98	56.21
GSMUA_Achr8P08450_001	Banana	plasma membrane	56.1	55.04
GSMUA_Achr3P21820_001	Banana	plasma membrane	58.02	50.39
GSMUA_Achr3P16100_001	Banana	plasma membrane	46.85	50.34
GSMUA_Achr4P06880_001	Banana	cytosol	5.26	44.57
GSMUA_Achr4P06890_001	Banana	plasma membrane	35.82	41.03
GSMUA_Achr7P27080_001	Banana	mitochondrion, plasma membrane	11.94	32.98

Protein Annotations

MapMan:24.2.16	Gene3D:3.10.580.10	InterPro:CBS_dom	InterPro:Cl-channel_core	InterPro:Cl-channel_volt-gated	InterPro:Cl_channel_pln
GO:GO:0003674	GO:GO:0005215	GO:GO:0005216	GO:GO:0005247	GO:GO:0005575	GO:GO:0006810
GO:GO:0006811	GO:GO:0006821	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0034220
GO:GO:0055085	GO:GO:1902476	EnsemblPlantsGene:GSMUA_Achr3G13250_001	EnsemblPlants:GSMUA_Achr3P13250_001	EnsemblPlants:GSMUA_Achr3T13250_001	InterPro:IPR000644
InterPro:IPR014743	UniProt:M0SE92	PFAM:PF00571	PFAM:PF00654	PRINTS:PR00762	PRINTS:PR01120
PFscan:PS51371	PANTHER:PTHR11689	PANTHER:PTHR11689:SF66	SMART:SM00116	SUPFAM:SSF54631	SUPFAM:SSF81340
TMHMM:TMhelix	UniParc:UPI0002961878	SEG:seg	:	:	:

Description

Putative chloride channel-like protein CLC-g [Source:GMGC_GENE;Acc:GSMUA_Achr3G13250_001]

Coordinates

chr3:-:9734755..9739210

Molecular Weight (calculated)

85727.8 Da

IEP (calculated)

7.745

GRAVY (calculated)

0.314

Length

779 amino acids

Sequence
(BLAST)

001: METAADVGEE ELLPPRSSLV SDDYEDVEEV EEQGGNLKEP LLEHHPINLR RHAPNNTSQL AIVGSNLCPI ESLDYELIEN DLFNQDWRSR GRAAILRYVF
101: LKWTFCLFIG IVAGAVGFFN NLAVENIAGY KFFTVSDLML ANKYWTAFWV FAGTNLALLL FATVITAFVS TAAGGSGIPE VKAYLNGVDA PDIFSLRTLV
201: VKIVGMIAAV SSSLHVGKAG PMVHIGACIG AIVGQGGSRK YGMTCRWLRY FKNDRDRRDL VTCGAAAGVA AAFRAPVGGV LFALESLSSW WRSALIWRAF
301: FTTAVVAVTL RALIDICERG KCGLFGKGGL IMYDVTSDTI TYHIADLPPV ILLGVIGGIL GSLYNFLMLK VLRVCSLVNE KGRAYRLLLA ATVSIFISCC
401: LFGLPWLAPC RPCLKEDCPS MGQPGSFKNF QCPPNHYNDL ASLFFNTNDD TIRKLYSSET NDDFQKSSIM LSFVASYVLG ILSYGVAAPF GLFVPIILTG
501: ASYGRLIGML MGVNSNLDHG LFAVLGSASF LGGTMRMTVS VCVIILELTN NLLLLPLGLP YLEDHAEPYM RQLTVSDVVA GPLRTFNGVE KVGNIIHILK
601: TTGHHAFPVI DEPPFSSSPV LYGLILRAHL LSLLKKKCFL PTCTLSSFDA SKQFVADDFA KRGSGKHDRI EDIEVTAEEM EMYIDLHPFT NTSPYTVVET
701: MSLAKALTLF RQVGLRHLLI VPKSSCRAPV VGILTRHDFM PEHILGLHPF LVKSRWKRLR FHQSTLTRFF RTSLMWACS

Best Arabidopsis Sequence Match ( AT5G33280.1 )
(BLAST)

001: MPNSTTEDSV AVPLLPSLRR ATNSTSQVAI VGANVCPIES LDYEIAENDF FKQDWRGRSK VEIFQYVFMK WLLCFCIGII VSLIGFANNL AVENLAGVKF
101: VVTSNMMIAG RFAMGFVVFS VTNLILTLFA SVITAFVAPA AAGSGIPEVK AYLNGVDAPE IFSLRTLIIK IIGNISAVSA SLLIGKAGPM VHTGACVASI
201: LGQGGSKRYR LTWRWLRFFK NDRDRRDLVT CGAAAGIAAS FRAPVGGVLF ALEEMSSWWR SALLWRIFFS TAVVAIVLRA LIDVCLSGKC GLFGKGGLIM
301: FDVYSENASY HLGDVLPVLL LGVVGGILGS LYNFLLDKVL RAYNYIYEKG VTWKILLACA ISIFTSCLLF GLPFLASCQP CPVDALEECP TIGRSGNFKK
401: YQCPPGHYND LASLIFNTND DAIKNLFSKN TDFEFHYFSV LVFFVTCFFL SIFSYGIVAP AGLFVPVIVT GASYGRFVGM LLGSNSNLNH GLFAVLGAAS
501: FLGGTMRMTV STCVILLELT NNLLLLPMMM VVLLISKTVA DGFNANIYNL IMKLKGFPYL YSHAEPYMRQ LLVGDVVTGP LQVFNGIEKV ETIVHVLKTT
601: NHNGFPVVDG PPLAAAPVLH GLILRAHILT LLKKRVFMPS PVACDSNTLS QFKAEEFAKK GSGRSDKIED VELSEEELNM YLDLHPFSNA SPYTVVETMS
701: LAKALILFRE VGIRHLLVIP KTSNRPPVVG ILTRHDFMPE HILGLHPSVS RSKWKRLRIR LPFFS

Arabidopsis Description

CLC-GPutative chloride channel-like protein CLC-g [Source:UniProtKB/Swiss-Prot;Acc:P60300]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.