Factsheet for GSMUA_Achr4P06880_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plasma membrane 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plasma membrane
BaCelLo:	nucleus
EpiLoc:	plasma membrane
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os03t0695700-01	Rice	extracellular, plasma membrane	81.52	27.88
GSMUA_Achr7P27080_001	Banana	mitochondrion, plasma membrane	61.96	20.21
HORVU0Hr1G040330.16	Barley	plasma membrane	82.61	12.93
TraesCS4A01G277600.2	Wheat	plasma membrane	83.7	9.55
Zm00001d033597_P004	Maize	plasma membrane	80.43	9.48
TraesCS4D01G033500.1	Wheat	plasma membrane	82.61	9.46
TraesCS4B01G035500.1	Wheat	plasma membrane	82.61	9.43
KXG37802	Sorghum	plasma membrane	80.43	9.27
AT5G26240.1	Thale cress	plasma membrane	76.09	8.84
Bra009891.1-P	Field mustard	plasma membrane	76.09	8.84
CDX88226	Canola	plasma membrane	76.09	8.84
CDY52633	Canola	plasma membrane	76.09	8.73
VIT_05s0020g03090.t01	Wine grape	plasma membrane	73.91	8.5
KRH77868	Soybean	plasma membrane	71.74	8.24
KRH27622	Soybean	plasma membrane	70.65	8.11
Solyc09g075800.2.1	Tomato	plasma membrane	69.57	8.07
GSMUA_Achr6P24170_001	Banana	plasma membrane	42.39	5.36
GSMUA_Achr3P13250_001	Banana	cytosol, peroxisome, plasma membrane	44.57	5.26
GSMUA_Achr3P16100_001	Banana	plasma membrane	39.13	4.97
GSMUA_Achr5P23490_001	Banana	plasma membrane	42.39	4.96
GSMUA_Achr6P02920_001	Banana	plasma membrane	40.22	4.89
GSMUA_Achr6P07410_001	Banana	plasma membrane	40.22	4.83
GSMUA_Achr3P21820_001	Banana	plasma membrane	45.65	4.68
GSMUA_Achr1P26050_001	Banana	plasma membrane	39.13	4.66
GSMUA_Achr8P08450_001	Banana	plasma membrane	40.22	4.66
GSMUA_Achr4P06890_001	Banana	plasma membrane	6.52	0.88
HORVU4Hr1G005590.4	Barley	plasma membrane	0.0	0.0

Protein Annotations

EnsemblPlants:GSMUA_Achr4P06880_001	EnsemblPlants:GSMUA_Achr4T06880_001	EnsemblPlantsGene:GSMUA_Achr4G06880_001	Gene3D:3.10.580.10	InterPro:CBS_dom	InterPro:IPR000644
PANTHER:PTHR11689	PANTHER:PTHR11689:SF92	PFAM:PF00571	PFscan:PS51371	SEG:seg	SMART:SM00116
SUPFAM:SSF54631	UniParc:UPI000295725C	UniProt:M0SLQ5	MapMan:35.1	:	:

Description

Chloride channel protein CLC-d [Source:GMGC_GENE;Acc:GSMUA_Achr4G06880_001]

Coordinates

chr4:-:5147949..5150116

Molecular Weight (calculated)

10468.6 Da

IEP (calculated)

4.608

GRAVY (calculated)

-0.055

Length

92 amino acids

Sequence
(BLAST)

1: MSIEEIHLTE DELELYLDLA PFLNPSPYIV PEDMSLAKVY NLFRQLGLRH IFVVPRPSRV IGLITRKDLL LEERDHSATT ELQSTSISAS SS

Best Arabidopsis Sequence Match ( AT5G26240.1 )
(BLAST)

001: MLSNHLQNGI ESDNLLWSRV PESDDTSTDD ITLLNSHRDG DGGVNSLDYE VIENYAYREE QAHRGKLYVG YYVAVKWFFS LLIGIGTGLA AVFINLSVEN
101: FAGWKFALTF AIIQKSYFAG FIVYLLINLV LVFSSAYIIT QFAPAAAGSG IPEIKGYLNG IDIPGTLLFR TLIGKIFGSI GSVGGGLALG KEGPLVHTGA
201: CIASLLGQGG STKYHLNSRW PQLFKSDRDR RDLVTCGCAA GVAAAFRAPV GGVLFALEEV TSWWRSQLMW RVFFTSAIVA VVVRTAMGWC KSGICGHFGG
301: GGFIIWDVSD GQDDYYFKEL LPMAVIGVIG GLLGALFNQL TLYMTSWRRN SLHKKGNRVK IIEACIISCI TSAISFGLPL LRKCSPCPES VPDSGIECPR
401: PPGMYGNYVN FFCKTDNEYN DLATIFFNTQ DDAIRNLFSA KTMREFSAQS LLTFLAMFYT LAVVTFGTAV PAGQFVPGIM IGSTYGRLVG MFVVRFYKKL
501: NIEEGTYALL GAASFLGGSM RMTVSLCVIM VEITNNLKLL PLIMLVLLIS KAVGDAFNEG LYEVQARLKG IPLLESRPKY HMRQMIAKEA CQSQKVISLP
601: RVIRVADVAS ILGSNKHNGF PVIDHTRSGE TLVIGLVLRS HLLVLLQSKV DFQHSPLPCD PSARNIRHSF SEFAKPVSSK GLCIEDIHLT SDDLEMYIDL
701: APFLNPSPYV VPEDMSLTKV YNLFRQLGLR HLFVVPRPSR VIGLITRKDL LIEENGESSA VELQQSTSVR GRYSETATRM DAARPLLDDL LG

Arabidopsis Description

CLC-DChloride channel protein CLC-d [Source:UniProtKB/Swiss-Prot;Acc:P92943]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.