Factsheet for AT5G26240.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
plasma membrane 4
extracellular 1
endoplasmic reticulum 1
vacuole 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	nucleus, plasma membrane
BaCelLo:	nucleus
MultiLoc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra009891.1-P	Field mustard	plasma membrane	97.1	97.1
CDX88226	Canola	plasma membrane	97.1	97.1
CDY52633	Canola	plasma membrane	97.22	96.01
VIT_05s0020g03090.t01	Wine grape	plasma membrane	82.95	82.12
KRH77868	Soybean	plasma membrane	82.58	81.65
KRH27622	Soybean	plasma membrane	81.82	80.9
Solyc09g075800.2.1	Tomato	plasma membrane	80.93	80.83
GSMUA_Achr4P06890_001	Banana	plasma membrane	66.79	77.79
GSMUA_Achr4P06880_001	Banana	cytosol	8.84	76.09
Zm00001d033597_P004	Maize	plasma membrane	73.99	75.03
HORVU4Hr1G005590.4	Barley	plasma membrane	20.33	74.88
TraesCS4D01G033500.1	Wheat	plasma membrane	75.76	74.72
TraesCS4A01G277600.2	Wheat	plasma membrane	75.76	74.44
KXG37802	Sorghum	plasma membrane	75.0	74.44
TraesCS4B01G035500.1	Wheat	plasma membrane	75.63	74.32
HORVU0Hr1G040330.16	Barley	plasma membrane	54.29	73.13
Os03t0695700-01	Rice	extracellular, plasma membrane	23.99	70.63
GSMUA_Achr7P27080_001	Banana	mitochondrion, plasma membrane	21.46	60.28
AT5G49890.1	Thale cress	plasma membrane	44.32	45.06
AT5G33280.1	Thale cress	plasma membrane	43.06	44.58
AT5G40890.1	Thale cress	plasma membrane	41.04	41.94
AT3G27170.1	Thale cress	plasma membrane	41.29	41.92

Protein Annotations

Gene3D:1.10.3080.10	MapMan:24.2.16	Gene3D:3.10.580.10	EntrezGene:832693	ProteinID:AAC26247.2	EMBL:AC005965
ProteinID:AED93540.1	ArrayExpress:AT5G26240	EnsemblPlantsGene:AT5G26240	RefSeq:AT5G26240	TAIR:AT5G26240	RefSeq:AT5G26240-TAIR-G
EnsemblPlants:AT5G26240.1	TAIR:AT5G26240.1	Unigene:At.25560	InterPro:CBS_dom	Symbol:CLC-D	InterPro:Cl-channel_core
InterPro:Cl-channel_volt-gated	InterPro:Cl_channel_pln	GO:GO:0003674	GO:GO:0005215	GO:GO:0005216	GO:GO:0005244
GO:GO:0005247	GO:GO:0005254	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005794	GO:GO:0005802	GO:GO:0006810	GO:GO:0006811	GO:GO:0006821	GO:GO:0008150
GO:GO:0009653	GO:GO:0009826	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016043
GO:GO:0016049	GO:GO:0034220	GO:GO:0034707	GO:GO:0034765	GO:GO:0040007	GO:GO:0055085
GO:GO:1902476	InterPro:IPR000644	InterPro:IPR014743	RefSeq:NP_001330038.1	RefSeq:NP_197996.1	UniProt:P92943
PFAM:PF00571	PFAM:PF00654	PO:PO:0000013	PO:PO:0000037	PO:PO:0000084	PO:PO:0000230
PO:PO:0000293	PO:PO:0001017	PO:PO:0001054	PO:PO:0001078	PO:PO:0001081	PO:PO:0001185
PO:PO:0004507	PO:PO:0007064	PO:PO:0007095	PO:PO:0007098	PO:PO:0007103	PO:PO:0007115
PO:PO:0007123	PO:PO:0007611	PO:PO:0007616	PO:PO:0008019	PO:PO:0009005	PO:PO:0009006
PO:PO:0009009	PO:PO:0009010	PO:PO:0009025	PO:PO:0009029	PO:PO:0009030	PO:PO:0009031
PO:PO:0009032	PO:PO:0009046	PO:PO:0009047	PO:PO:0009052	PO:PO:0020030	PO:PO:0020038
PO:PO:0020100	PO:PO:0020137	PO:PO:0025022	PO:PO:0025281	PRINTS:PR00762	PRINTS:PR01120
PFscan:PS51371	PANTHER:PTHR11689	PANTHER:PTHR11689:SF105	SMART:SM00116	SUPFAM:SSF54631	SUPFAM:SSF81340
TMHMM:TMhelix	UniParc:UPI00001625BF	EMBL:Z71450	SEG:seg	:	:

Description

CLC-DChloride channel protein CLC-d [Source:UniProtKB/Swiss-Prot;Acc:P92943]

Coordinates

chr5:+:9189425..9194755

Molecular Weight (calculated)

87067.1 Da

IEP (calculated)

7.925

GRAVY (calculated)

0.228

Length

792 amino acids

Sequence
(BLAST)

001: MLSNHLQNGI ESDNLLWSRV PESDDTSTDD ITLLNSHRDG DGGVNSLDYE VIENYAYREE QAHRGKLYVG YYVAVKWFFS LLIGIGTGLA AVFINLSVEN
101: FAGWKFALTF AIIQKSYFAG FIVYLLINLV LVFSSAYIIT QFAPAAAGSG IPEIKGYLNG IDIPGTLLFR TLIGKIFGSI GSVGGGLALG KEGPLVHTGA
201: CIASLLGQGG STKYHLNSRW PQLFKSDRDR RDLVTCGCAA GVAAAFRAPV GGVLFALEEV TSWWRSQLMW RVFFTSAIVA VVVRTAMGWC KSGICGHFGG
301: GGFIIWDVSD GQDDYYFKEL LPMAVIGVIG GLLGALFNQL TLYMTSWRRN SLHKKGNRVK IIEACIISCI TSAISFGLPL LRKCSPCPES VPDSGIECPR
401: PPGMYGNYVN FFCKTDNEYN DLATIFFNTQ DDAIRNLFSA KTMREFSAQS LLTFLAMFYT LAVVTFGTAV PAGQFVPGIM IGSTYGRLVG MFVVRFYKKL
501: NIEEGTYALL GAASFLGGSM RMTVSLCVIM VEITNNLKLL PLIMLVLLIS KAVGDAFNEG LYEVQARLKG IPLLESRPKY HMRQMIAKEA CQSQKVISLP
601: RVIRVADVAS ILGSNKHNGF PVIDHTRSGE TLVIGLVLRS HLLVLLQSKV DFQHSPLPCD PSARNIRHSF SEFAKPVSSK GLCIEDIHLT SDDLEMYIDL
701: APFLNPSPYV VPEDMSLTKV YNLFRQLGLR HLFVVPRPSR VIGLITRKDL LIEENGESSA VELQQSTSVR GRYSETATRM DAARPLLDDL LG

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.