Subcellular Localization
min:
: max
Winner_takes_all: extracellular, plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- extracellular 4
- golgi 3
- plasma membrane 4
- endoplasmic reticulum 3
- vacuole 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr4P06880_001 | Banana | cytosol | 27.88 | 81.52 |
| HORVU0Hr1G040330.16 | Barley | plasma membrane | 88.48 | 40.48 |
| KXG37802 | Sorghum | plasma membrane | 89.96 | 30.33 |
| TraesCS4A01G277600.2 | Wheat | plasma membrane | 88.48 | 29.53 |
| TraesCS4D01G033500.1 | Wheat | plasma membrane | 88.1 | 29.51 |
| TraesCS4B01G035500.1 | Wheat | plasma membrane | 87.73 | 29.28 |
| Zm00001d033597_P004 | Maize | plasma membrane | 84.01 | 28.94 |
| Bra009891.1-P | Field mustard | plasma membrane | 71.0 | 24.12 |
| CDX88226 | Canola | plasma membrane | 71.0 | 24.12 |
| AT5G26240.1 | Thale cress | plasma membrane | 70.63 | 23.99 |
| VIT_05s0020g03090.t01 | Wine grape | plasma membrane | 70.63 | 23.75 |
| CDY52633 | Canola | plasma membrane | 70.63 | 23.69 |
| KRH77868 | Soybean | plasma membrane | 68.77 | 23.1 |
| Solyc09g075800.2.1 | Tomato | plasma membrane | 68.03 | 23.08 |
| KRH27622 | Soybean | plasma membrane | 68.4 | 22.97 |
| GSMUA_Achr4P06890_001 | Banana | plasma membrane | 44.61 | 17.65 |
| Os08t0300300-01 | Rice | plasma membrane | 38.66 | 13.07 |
| Os02t0558100-02 | Rice | plasma membrane | 37.17 | 12.44 |
| Os01t0876100-00 | Rice | plasma membrane | 38.66 | 11.93 |
| Os03t0695600-01 | Rice | cytosol | 4.46 | 5.66 |
| HORVU4Hr1G005590.4 | Barley | plasma membrane | 0.0 | 0.0 |
| Os12t0438600-01 | Rice | plasma membrane | 0.0 | 0.0 |
Protein Annotations
| Gene3D:1.10.3080.10 | MapMan:24.2.16 | Gene3D:3.10.580.10 | ProteinID:BAF12891.1 | ProteinID:BAS85884.1 | InterPro:CBS_dom |
| InterPro:Cl-channel_core | GO:GO:0003674 | GO:GO:0005215 | GO:GO:0005247 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005794 | GO:GO:0005802 | GO:GO:0006810 | GO:GO:0006811 |
| GO:GO:0006821 | GO:GO:0008150 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0055085 | GO:GO:1902476 |
| InterPro:IPR000644 | InterPro:IPR014743 | EnsemblPlantsGene:Os03g0695700 | EnsemblPlants:Os03t0695700-01 | PFAM:PF00571 | PFscan:PS51371 |
| PANTHER:PTHR11689 | PANTHER:PTHR11689:SF92 | UniProt:Q0DPE7 | SMART:SM00116 | SUPFAM:SSF54631 | SUPFAM:SSF81340 |
| SignalP:SignalP-TM | UniParc:UPI0000E121B7 | SEG:seg | : | : | : |
Description
CYSTATHIONINE B-SYNTHASE DOMAIN CONTAINING CHLORIDE CHANNEL PROTEIN 4Similar to Chloride channel protein CLC-d (AtCLC-d). (Os03t0695700-01)
Coordinates
chr3:-:27861769..27864057
Molecular Weight (calculated)
29815.6 Da
IEP (calculated)
8.487
GRAVY (calculated)
0.054
Length
269 amino acids
Sequence
(BLAST)
(BLAST)
001: LCVIMVEITN NLKLLPLIML VLLISKAVGD FFNEGLYEVQ AQLRGIPLLD SRPKQVMRNM SAKDACKNQK VVSLPRVSRI VDIISVLRSN KHNGFPVVDR
101: GQNGESLVIG LILRSHLLVL LQSKVDFQNS PFPCGPGILN RHNTSDFVKP ASSKGKSIDD IHLTEDELGL YLDLAPFLNP SPYIVPEDMS LAKVYNLFRQ
201: LGLRHIFVVP RPSRVVGLIT RQDLLLEENG NNVTTELQST SVRGQLNGKM LSGSTHLGHP LLDSIVVEE
101: GQNGESLVIG LILRSHLLVL LQSKVDFQNS PFPCGPGILN RHNTSDFVKP ASSKGKSIDD IHLTEDELGL YLDLAPFLNP SPYIVPEDMS LAKVYNLFRQ
201: LGLRHIFVVP RPSRVVGLIT RQDLLLEENG NNVTTELQST SVRGQLNGKM LSGSTHLGHP LLDSIVVEE
001: MLSNHLQNGI ESDNLLWSRV PESDDTSTDD ITLLNSHRDG DGGVNSLDYE VIENYAYREE QAHRGKLYVG YYVAVKWFFS LLIGIGTGLA AVFINLSVEN
101: FAGWKFALTF AIIQKSYFAG FIVYLLINLV LVFSSAYIIT QFAPAAAGSG IPEIKGYLNG IDIPGTLLFR TLIGKIFGSI GSVGGGLALG KEGPLVHTGA
201: CIASLLGQGG STKYHLNSRW PQLFKSDRDR RDLVTCGCAA GVAAAFRAPV GGVLFALEEV TSWWRSQLMW RVFFTSAIVA VVVRTAMGWC KSGICGHFGG
301: GGFIIWDVSD GQDDYYFKEL LPMAVIGVIG GLLGALFNQL TLYMTSWRRN SLHKKGNRVK IIEACIISCI TSAISFGLPL LRKCSPCPES VPDSGIECPR
401: PPGMYGNYVN FFCKTDNEYN DLATIFFNTQ DDAIRNLFSA KTMREFSAQS LLTFLAMFYT LAVVTFGTAV PAGQFVPGIM IGSTYGRLVG MFVVRFYKKL
501: NIEEGTYALL GAASFLGGSM RMTVSLCVIM VEITNNLKLL PLIMLVLLIS KAVGDAFNEG LYEVQARLKG IPLLESRPKY HMRQMIAKEA CQSQKVISLP
601: RVIRVADVAS ILGSNKHNGF PVIDHTRSGE TLVIGLVLRS HLLVLLQSKV DFQHSPLPCD PSARNIRHSF SEFAKPVSSK GLCIEDIHLT SDDLEMYIDL
701: APFLNPSPYV VPEDMSLTKV YNLFRQLGLR HLFVVPRPSR VIGLITRKDL LIEENGESSA VELQQSTSVR GRYSETATRM DAARPLLDDL LG
101: FAGWKFALTF AIIQKSYFAG FIVYLLINLV LVFSSAYIIT QFAPAAAGSG IPEIKGYLNG IDIPGTLLFR TLIGKIFGSI GSVGGGLALG KEGPLVHTGA
201: CIASLLGQGG STKYHLNSRW PQLFKSDRDR RDLVTCGCAA GVAAAFRAPV GGVLFALEEV TSWWRSQLMW RVFFTSAIVA VVVRTAMGWC KSGICGHFGG
301: GGFIIWDVSD GQDDYYFKEL LPMAVIGVIG GLLGALFNQL TLYMTSWRRN SLHKKGNRVK IIEACIISCI TSAISFGLPL LRKCSPCPES VPDSGIECPR
401: PPGMYGNYVN FFCKTDNEYN DLATIFFNTQ DDAIRNLFSA KTMREFSAQS LLTFLAMFYT LAVVTFGTAV PAGQFVPGIM IGSTYGRLVG MFVVRFYKKL
501: NIEEGTYALL GAASFLGGSM RMTVSLCVIM VEITNNLKLL PLIMLVLLIS KAVGDAFNEG LYEVQARLKG IPLLESRPKY HMRQMIAKEA CQSQKVISLP
601: RVIRVADVAS ILGSNKHNGF PVIDHTRSGE TLVIGLVLRS HLLVLLQSKV DFQHSPLPCD PSARNIRHSF SEFAKPVSSK GLCIEDIHLT SDDLEMYIDL
701: APFLNPSPYV VPEDMSLTKV YNLFRQLGLR HLFVVPRPSR VIGLITRKDL LIEENGESSA VELQQSTSVR GRYSETATRM DAARPLLDDL LG
Arabidopsis Description
CLC-DChloride channel protein CLC-d [Source:UniProtKB/Swiss-Prot;Acc:P92943]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.