Factsheet for GSMUA_Achr4P06890_001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 1
plasma membrane 5
extracellular 1
endoplasmic reticulum 1
vacuole 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	plastid, secretory
BaCelLo:	plastid
MultiLoc:	plasma membrane
Plant-mPloc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU4Hr1G005590.4	Barley	plasma membrane	24.41	77.21
Zm00001d033597_P004	Maize	plasma membrane	81.32	70.81
KXG37802	Sorghum	plasma membrane	82.06	69.92
VIT_05s0020g03090.t01	Wine grape	plasma membrane	82.21	69.88
TraesCS4D01G033500.1	Wheat	plasma membrane	80.88	68.49
TraesCS4B01G035500.1	Wheat	plasma membrane	81.03	68.36
TraesCS4A01G277600.2	Wheat	plasma membrane	80.88	68.24
KRH77868	Soybean	plasma membrane	80.0	67.92
KRH27622	Soybean	plasma membrane	79.12	67.17
Solyc09g075800.2.1	Tomato	plasma membrane	77.94	66.83
AT5G26240.1	Thale cress	plasma membrane	77.79	66.79
Bra009891.1-P	Field mustard	plasma membrane	77.35	66.41
CDX88226	Canola	plasma membrane	77.35	66.41
CDY52633	Canola	plasma membrane	77.5	65.71
HORVU0Hr1G040330.16	Barley	plasma membrane	55.15	63.78
Os03t0695700-01	Rice	extracellular, plasma membrane	17.65	44.61
GSMUA_Achr6P07410_001	Banana	plasma membrane	47.94	42.56
GSMUA_Achr6P24170_001	Banana	plasma membrane	44.41	41.54
GSMUA_Achr7P27080_001	Banana	mitochondrion, plasma membrane	17.06	41.13
GSMUA_Achr5P23490_001	Banana	plasma membrane	45.44	39.31
GSMUA_Achr6P02920_001	Banana	plasma membrane	43.53	39.15
GSMUA_Achr3P16100_001	Banana	plasma membrane	41.62	39.03
GSMUA_Achr8P08450_001	Banana	plasma membrane	43.82	37.53
GSMUA_Achr3P13250_001	Banana	cytosol, peroxisome, plasma membrane	41.03	35.82
GSMUA_Achr1P26050_001	Banana	plasma membrane	38.53	33.94
GSMUA_Achr3P21820_001	Banana	plasma membrane	43.97	33.33
GSMUA_Achr4P06880_001	Banana	cytosol	0.88	6.52

Protein Annotations

Gene3D:1.10.3080.10	MapMan:24.2.16	Gene3D:3.10.580.10	InterPro:Cl-channel_core	InterPro:Cl-channel_volt-gated	InterPro:Cl_channel_pln
GO:GO:0003674	GO:GO:0005215	GO:GO:0005216	GO:GO:0005247	GO:GO:0005575	GO:GO:0006810
GO:GO:0006821	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0034220	GO:GO:0055085
GO:GO:1902476	EnsemblPlantsGene:GSMUA_Achr4G06890_001	EnsemblPlants:GSMUA_Achr4P06890_001	EnsemblPlants:GSMUA_Achr4T06890_001	InterPro:IPR014743	UniProt:M0SLQ6
PFAM:PF00654	PRINTS:PR00762	PRINTS:PR01120	PANTHER:PTHR11689	PANTHER:PTHR11689:SF105	SUPFAM:SSF54631
SUPFAM:SSF81340	TMHMM:TMhelix	UniParc:UPI000296A6D3	SEG:seg	:	:

Description

Chloride channel protein CLC-d [Source:GMGC_GENE;Acc:GSMUA_Achr4G06890_001]

Coordinates

chr4:-:5150143..5166392

Molecular Weight (calculated)

75071.0 Da

IEP (calculated)

9.346

GRAVY (calculated)

0.309

Length

680 amino acids

Sequence
(BLAST)

001: MLSNHLQNGI ETARLVWSRL PSSEEGERTE IELPSHSRGA ESLDYEVIEN YAYREAQAQR GKLWVSYYVV LKWLFSLIIG IGTGLAAVFI NLAVENFSGW
101: KYAATFSIIQ HSYFVGFLVY ILFNLGLVFS SVYIVTKFAP AAAGSGIPEI KGYLNGVDTP GILLFRTLIG KVFGSIGSVG GGLALGKEGP LVHTGACIAS
201: LLGQGGSKRY HLSSKWVRVF ESDRDRRDLV TCGCAAGVAA AFRAPVGGVL FALEEVTSWW RSQLMWRVFF TSAVVAVVVR SAMNWCKSGK CGHFGSGGFI
301: IWDISGGQED YSFQELLPMA IIGVIGGLLG ALFNQLTLFI TSWRRKYLHK KGNRIKILEV CIISLVTSVI SFGLPLLRRC SACPDSEMSP GIECPRPPGT
401: DGNFVNFYCA KDSEYNDLAT IFFNTQDDAI RNLFSAKTFH EYSAQSLVIF LVMFYSLAVV TFGTAVPAGQ FVPGIMIGST YGRLVGMLVV KFYRKLNVEE
501: GTYALLGAAS FLGGSMRMTV SLCVIMVEIT NNLKLLPLIM LVLLISKAVG DFFNKGLYEE QAQLRGIPLL ESRPKLYMRN MTAKEASKNQ KVVSFPRVVK
601: VGNIVSVLRS NKHNGYPVVD QGQNGETLVI GLILRSHLLV LLQSKMDFQN SPFPCDMRGI NRHVLFFNLY FRCFGYFAIK

Best Arabidopsis Sequence Match ( AT5G26240.1 )
(BLAST)

001: MLSNHLQNGI ESDNLLWSRV PESDDTSTDD ITLLNSHRDG DGGVNSLDYE VIENYAYREE QAHRGKLYVG YYVAVKWFFS LLIGIGTGLA AVFINLSVEN
101: FAGWKFALTF AIIQKSYFAG FIVYLLINLV LVFSSAYIIT QFAPAAAGSG IPEIKGYLNG IDIPGTLLFR TLIGKIFGSI GSVGGGLALG KEGPLVHTGA
201: CIASLLGQGG STKYHLNSRW PQLFKSDRDR RDLVTCGCAA GVAAAFRAPV GGVLFALEEV TSWWRSQLMW RVFFTSAIVA VVVRTAMGWC KSGICGHFGG
301: GGFIIWDVSD GQDDYYFKEL LPMAVIGVIG GLLGALFNQL TLYMTSWRRN SLHKKGNRVK IIEACIISCI TSAISFGLPL LRKCSPCPES VPDSGIECPR
401: PPGMYGNYVN FFCKTDNEYN DLATIFFNTQ DDAIRNLFSA KTMREFSAQS LLTFLAMFYT LAVVTFGTAV PAGQFVPGIM IGSTYGRLVG MFVVRFYKKL
501: NIEEGTYALL GAASFLGGSM RMTVSLCVIM VEITNNLKLL PLIMLVLLIS KAVGDAFNEG LYEVQARLKG IPLLESRPKY HMRQMIAKEA CQSQKVISLP
601: RVIRVADVAS ILGSNKHNGF PVIDHTRSGE TLVIGLVLRS HLLVLLQSKV DFQHSPLPCD PSARNIRHSF SEFAKPVSSK GLCIEDIHLT SDDLEMYIDL
701: APFLNPSPYV VPEDMSLTKV YNLFRQLGLR HLFVVPRPSR VIGLITRKDL LIEENGESSA VELQQSTSVR GRYSETATRM DAARPLLDDL LG

Arabidopsis Description

CLC-DChloride channel protein CLC-d [Source:UniProtKB/Swiss-Prot;Acc:P92943]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.