Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 3
- plasma membrane 4
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- golgi 1
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr4P06880_001 | Banana | cytosol | 20.21 | 61.96 |
| VIT_05s0020g03090.t01 | Wine grape | plasma membrane | 60.99 | 21.5 |
| AT5G26240.1 | Thale cress | plasma membrane | 60.28 | 21.46 |
| Bra009891.1-P | Field mustard | plasma membrane | 59.93 | 21.34 |
| CDX88226 | Canola | plasma membrane | 59.93 | 21.34 |
| CDY52633 | Canola | plasma membrane | 59.93 | 21.07 |
| Solyc09g075800.2.1 | Tomato | plasma membrane | 58.16 | 20.68 |
| KRH77868 | Soybean | plasma membrane | 58.16 | 20.47 |
| KRH27622 | Soybean | plasma membrane | 57.45 | 20.22 |
| GSMUA_Achr4P06890_001 | Banana | plasma membrane | 41.13 | 17.06 |
| GSMUA_Achr6P02920_001 | Banana | plasma membrane | 35.82 | 13.36 |
| GSMUA_Achr5P23490_001 | Banana | plasma membrane | 36.88 | 13.23 |
| GSMUA_Achr6P07410_001 | Banana | plasma membrane | 35.82 | 13.19 |
| GSMUA_Achr6P24170_001 | Banana | plasma membrane | 32.98 | 12.79 |
| GSMUA_Achr3P13250_001 | Banana | cytosol, peroxisome, plasma membrane | 32.98 | 11.94 |
| GSMUA_Achr3P16100_001 | Banana | plasma membrane | 30.5 | 11.86 |
| GSMUA_Achr8P08450_001 | Banana | plasma membrane | 33.33 | 11.84 |
| GSMUA_Achr1P26050_001 | Banana | plasma membrane | 29.79 | 10.88 |
| GSMUA_Achr3P21820_001 | Banana | plasma membrane | 33.69 | 10.59 |
Protein Annotations
| Gene3D:1.10.3080.10 | Gene3D:3.10.580.10 | MapMan:35.1 | InterPro:Cl-channel_core | InterPro:Cl-channel_volt-gated | GO:GO:0003674 |
| GO:GO:0005215 | GO:GO:0005216 | GO:GO:0005247 | GO:GO:0005575 | GO:GO:0006810 | GO:GO:0006821 |
| GO:GO:0008150 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0034220 | GO:GO:0055085 | GO:GO:1902476 |
| EnsemblPlantsGene:GSMUA_Achr7G27080_001 | EnsemblPlants:GSMUA_Achr7P27080_001 | EnsemblPlants:GSMUA_Achr7T27080_001 | InterPro:IPR014743 | UniProt:M0TL44 | PFAM:PF00654 |
| PRINTS:PR00762 | PANTHER:PTHR11689 | PANTHER:PTHR11689:SF105 | SUPFAM:SSF54631 | SUPFAM:SSF81340 | TMHMM:TMhelix |
| UniParc:UPI000294D9FB | SEG:seg | : | : | : | : |
Description
Chloride channel protein CLC-d [Source:GMGC_GENE;Acc:GSMUA_Achr7G27080_001]
Coordinates
chr7:-:28228714..28234536
Molecular Weight (calculated)
31726.6 Da
IEP (calculated)
6.503
GRAVY (calculated)
0.028
Length
282 amino acids
Sequence
(BLAST)
(BLAST)
001: MASLQLQIRV GPASCRYSCR ADPESSDDLG HRWFTPTFIL VTCVAYALLG AASFLRGPMR MTVSLCVIMV EITNNLKLLP LIMLVLLISK QYLRNRAAKE
101: ACKNQKVSAT TKIDIISVLW SNKHNGFPVI DHEQNGEALV IGLILCSHLL VLVKFKMDFQ NSPFPCDMWG VSNRYNFSDF VKTVSGKGMS TEDIHLTEDE
201: LELYLDLASY LNPAPYIVPE DMSLAKVYNL FRQKDLLIEE SDHSATMELS STSVRAQHLD RRTIGGHTHP EHPLLDSLLI QE
101: ACKNQKVSAT TKIDIISVLW SNKHNGFPVI DHEQNGEALV IGLILCSHLL VLVKFKMDFQ NSPFPCDMWG VSNRYNFSDF VKTVSGKGMS TEDIHLTEDE
201: LELYLDLASY LNPAPYIVPE DMSLAKVYNL FRQKDLLIEE SDHSATMELS STSVRAQHLD RRTIGGHTHP EHPLLDSLLI QE
001: MLSNHLQNGI ESDNLLWSRV PESDDTSTDD ITLLNSHRDG DGGVNSLDYE VIENYAYREE QAHRGKLYVG YYVAVKWFFS LLIGIGTGLA AVFINLSVEN
101: FAGWKFALTF AIIQKSYFAG FIVYLLINLV LVFSSAYIIT QFAPAAAGSG IPEIKGYLNG IDIPGTLLFR TLIGKIFGSI GSVGGGLALG KEGPLVHTGA
201: CIASLLGQGG STKYHLNSRW PQLFKSDRDR RDLVTCGCAA GVAAAFRAPV GGVLFALEEV TSWWRSQLMW RVFFTSAIVA VVVRTAMGWC KSGICGHFGG
301: GGFIIWDVSD GQDDYYFKEL LPMAVIGVIG GLLGALFNQL TLYMTSWRRN SLHKKGNRVK IIEACIISCI TSAISFGLPL LRKCSPCPES VPDSGIECPR
401: PPGMYGNYVN FFCKTDNEYN DLATIFFNTQ DDAIRNLFSA KTMREFSAQS LLTFLAMFYT LAVVTFGTAV PAGQFVPGIM IGSTYGRLVG MFVVRFYKKL
501: NIEEGTYALL GAASFLGGSM RMTVSLCVIM VEITNNLKLL PLIMLVLLIS KAVGDAFNEG LYEVQARLKG IPLLESRPKY HMRQMIAKEA CQSQKVISLP
601: RVIRVADVAS ILGSNKHNGF PVIDHTRSGE TLVIGLVLRS HLLVLLQSKV DFQHSPLPCD PSARNIRHSF SEFAKPVSSK GLCIEDIHLT SDDLEMYIDL
701: APFLNPSPYV VPEDMSLTKV YNLFRQLGLR HLFVVPRPSR VIGLITRKDL LIEENGESSA VELQQSTSVR GRYSETATRM DAARPLLDDL LG
101: FAGWKFALTF AIIQKSYFAG FIVYLLINLV LVFSSAYIIT QFAPAAAGSG IPEIKGYLNG IDIPGTLLFR TLIGKIFGSI GSVGGGLALG KEGPLVHTGA
201: CIASLLGQGG STKYHLNSRW PQLFKSDRDR RDLVTCGCAA GVAAAFRAPV GGVLFALEEV TSWWRSQLMW RVFFTSAIVA VVVRTAMGWC KSGICGHFGG
301: GGFIIWDVSD GQDDYYFKEL LPMAVIGVIG GLLGALFNQL TLYMTSWRRN SLHKKGNRVK IIEACIISCI TSAISFGLPL LRKCSPCPES VPDSGIECPR
401: PPGMYGNYVN FFCKTDNEYN DLATIFFNTQ DDAIRNLFSA KTMREFSAQS LLTFLAMFYT LAVVTFGTAV PAGQFVPGIM IGSTYGRLVG MFVVRFYKKL
501: NIEEGTYALL GAASFLGGSM RMTVSLCVIM VEITNNLKLL PLIMLVLLIS KAVGDAFNEG LYEVQARLKG IPLLESRPKY HMRQMIAKEA CQSQKVISLP
601: RVIRVADVAS ILGSNKHNGF PVIDHTRSGE TLVIGLVLRS HLLVLLQSKV DFQHSPLPCD PSARNIRHSF SEFAKPVSSK GLCIEDIHLT SDDLEMYIDL
701: APFLNPSPYV VPEDMSLTKV YNLFRQLGLR HLFVVPRPSR VIGLITRKDL LIEENGESSA VELQQSTSVR GRYSETATRM DAARPLLDDL LG
Arabidopsis Description
CLC-DChloride channel protein CLC-d [Source:UniProtKB/Swiss-Prot;Acc:P92943]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.