Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- plasma membrane 4
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr6P07410_001 | Banana | plasma membrane | 88.45 | 83.94 |
| EES12223 | Sorghum | plasma membrane | 84.18 | 76.69 |
| Zm00001d025474_P003 | Maize | plasma membrane | 83.22 | 76.1 |
| OQU85125 | Sorghum | plasma membrane | 84.04 | 74.97 |
| TraesCS3D01G126700.1 | Wheat | plasma membrane | 58.6 | 74.35 |
| Os02t0558100-02 | Rice | plasma membrane | 82.12 | 74.25 |
| TraesCS2A01G309900.1 | Wheat | plasma membrane | 81.57 | 73.94 |
| TraesCS2D01G308100.1 | Wheat | plasma membrane | 81.71 | 73.79 |
| TraesCS2B01G326900.1 | Wheat | plasma membrane | 81.71 | 73.79 |
| Zm00001d016855_P002 | Maize | plasma membrane | 83.08 | 72.95 |
| TraesCS3B01G144700.1 | Wheat | cytosol, nucleus, plasma membrane | 80.47 | 72.67 |
| TraesCS3A01G125300.1 | Wheat | cytosol, nucleus, plasma membrane | 80.47 | 72.67 |
| TraesCS3D01G126600.1 | Wheat | plasma membrane | 80.19 | 72.42 |
| GSMUA_Achr8P08450_001 | Banana | plasma membrane | 77.58 | 71.03 |
| HORVU2Hr1G077080.3 | Barley | mitochondrion, peroxisome, plasma membrane, plastid | 75.24 | 67.2 |
| GSMUA_Achr3P21820_001 | Banana | plasma membrane | 80.74 | 65.44 |
| GSMUA_Achr6P02920_001 | Banana | plasma membrane | 60.66 | 58.33 |
| GSMUA_Achr5P23490_001 | Banana | plasma membrane | 62.45 | 57.76 |
| GSMUA_Achr3P13250_001 | Banana | cytosol, peroxisome, plasma membrane | 61.49 | 57.38 |
| GSMUA_Achr1P26050_001 | Banana | plasma membrane | 59.83 | 56.35 |
| GSMUA_Achr3P16100_001 | Banana | plasma membrane | 54.75 | 54.9 |
| GSMUA_Achr4P06890_001 | Banana | plasma membrane | 41.54 | 44.41 |
| GSMUA_Achr4P06880_001 | Banana | cytosol | 5.36 | 42.39 |
| GSMUA_Achr7P27080_001 | Banana | mitochondrion, plasma membrane | 12.79 | 32.98 |
Protein Annotations
| MapMan:24.2.16 | Gene3D:3.10.580.10 | InterPro:CBS_dom | InterPro:Cl-channel_core | InterPro:Cl-channel_volt-gated | InterPro:Cl_channel_pln |
| GO:GO:0003674 | GO:GO:0005215 | GO:GO:0005216 | GO:GO:0005247 | GO:GO:0005575 | GO:GO:0006810 |
| GO:GO:0006811 | GO:GO:0006821 | GO:GO:0008150 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0034220 |
| GO:GO:0055085 | GO:GO:1902476 | EnsemblPlantsGene:GSMUA_Achr6G24170_001 | EnsemblPlants:GSMUA_Achr6P24170_001 | EnsemblPlants:GSMUA_Achr6T24170_001 | InterPro:IPR000644 |
| InterPro:IPR014743 | UniProt:M0T9R3 | PFAM:PF00571 | PFAM:PF00654 | PRINTS:PR00762 | PRINTS:PR01120 |
| PFscan:PS51371 | PANTHER:PTHR11689 | PANTHER:PTHR11689:SF109 | SMART:SM00116 | SUPFAM:SSF54631 | SUPFAM:SSF81340 |
| TMHMM:TMhelix | UniParc:UPI0002969610 | SEG:seg | : | : | : |
Description
Chloride channel protein CLC-c [Source:GMGC_GENE;Acc:GSMUA_Achr6G24170_001]
Coordinates
chr6:+:24576688..24587612
Molecular Weight (calculated)
78813.5 Da
IEP (calculated)
8.053
GRAVY (calculated)
0.393
Length
727 amino acids
Sequence
(BLAST)
(BLAST)
001: MERNASGFYE NENDAGSVRQ PLLRKRTMNT TSQIAIVGAN VCPIESLDYE IVENDLFKQD WRSRKKVQIF QYVLLKWTLA LLIGLATGII GFLNNLAVEN
101: IAGLKLLLTS NLMLENRYFT AFLAYGGINL ILAAAAAALC AYVAPAAAGS GIPEVKAYLN GVDAYSILAP STLFVKIFGS IAGVSAGFVL GKEGPMVHTG
201: ACIANLLGQG GSRKYHLTWT WLRYFESDRD RRDLITCGSA AGVAAAFRAP VGGVLFALEE AASWWRSALL WRTFFTTAIV AVVLRGLIEY CRSGKCGLFG
301: KGGLIMFDIS SNVSTYSTPD LIAVIVLGVI GGVFGALFNY LLDRILRTYS FINEKGAPFK ILLTITISIL TSCCSYGLPW LAKCAPCPKD LEEECPTVGC
401: SGNFKNFHCP PGYYNDLASL FLNTNGDAIR NLFSGGTSNE FHTSTLFLFF AAIYGLGLVT YGVAVPSGLF IPVILAGATY GRIIGTLLRP ISDLDAGLFA
501: LLGSASFLGG TMRMTVSVCV ILLELTNDLL MLSLAHAEPY MRHLVAGDVV SGPLITFSGV EKVGNIVEAL RLTGHNGFPV IDEPPFSDAP ELVGLVLRSH
601: LLVLLKGKRF TRERVKTGVK EILRRFGAFD FAKAGSGKGL KFEDLNILED EMDMFVDLHP ITNTSPYTVV ETMSLAKAAV LFRELGLRHL CVVPKTPGRP
701: PIVGILTRHD FTSEHILGLF PHIHPHK
101: IAGLKLLLTS NLMLENRYFT AFLAYGGINL ILAAAAAALC AYVAPAAAGS GIPEVKAYLN GVDAYSILAP STLFVKIFGS IAGVSAGFVL GKEGPMVHTG
201: ACIANLLGQG GSRKYHLTWT WLRYFESDRD RRDLITCGSA AGVAAAFRAP VGGVLFALEE AASWWRSALL WRTFFTTAIV AVVLRGLIEY CRSGKCGLFG
301: KGGLIMFDIS SNVSTYSTPD LIAVIVLGVI GGVFGALFNY LLDRILRTYS FINEKGAPFK ILLTITISIL TSCCSYGLPW LAKCAPCPKD LEEECPTVGC
401: SGNFKNFHCP PGYYNDLASL FLNTNGDAIR NLFSGGTSNE FHTSTLFLFF AAIYGLGLVT YGVAVPSGLF IPVILAGATY GRIIGTLLRP ISDLDAGLFA
501: LLGSASFLGG TMRMTVSVCV ILLELTNDLL MLSLAHAEPY MRHLVAGDVV SGPLITFSGV EKVGNIVEAL RLTGHNGFPV IDEPPFSDAP ELVGLVLRSH
601: LLVLLKGKRF TRERVKTGVK EILRRFGAFD FAKAGSGKGL KFEDLNILED EMDMFVDLHP ITNTSPYTVV ETMSLAKAAV LFRELGLRHL CVVPKTPGRP
701: PIVGILTRHD FTSEHILGLF PHIHPHK
001: MDDRHEGDHH DIEVEGGALH GFERKISGIL DDGSVGFRQP LLARNRKNTT SQIAIVGANT CPIESLDYEI FENDFFKQDW RSRKKIEILQ YTFLKWALAF
101: LIGLATGLVG FLNNLGVENI AGFKLLLIGN LMLKEKYFQA FFAFAGCNLI LATAAASLCA FIAPAAAGSG IPEVKAYLNG IDAYSILAPS TLFVKIFGSI
201: FGVAAGFVVG KEGPMVHTGA CIANLLGQGG SKKYRLTWKW LRFFKNDRDR RDLITCGAAA GVAAAFRAPV GGVLFALEEA ASWWRNALLW RTFFTTAVVA
301: VVLRSLIEFC RSGRCGLFGK GGLIMFDVNS GPVLYSTPDL LAIVFLGVIG GVLGSLYNYL VDKVLRTYSI INEKGPRFKI MLVMAVSILS SCCAFGLPWL
401: SQCTPCPIGI EEGKCPSVGR SSIYKSFQCP PNHYNDLSSL LLNTNDDAIR NLFTSRSENE FHISTLAIFF VAVYCLGIIT YGIAIPSGLF IPVILAGASY
501: GRLVGRLLGP VSQLDVGLFS LLGAASFLGG TMRMTVSLCV ILLELTNNLL MLPLVMLVLL ISKTVADCFN RGVYDQIVTM KGLPYMEDHA EPYMRNLVAK
601: DVVSGALISF SRVEKVGVIW QALKMTRHNG FPVIDEPPFT EASELCGIAL RSHLLVLLQG KKFSKQRTTF GSQILRSCKA RDFGKAGLGK GLKIEDLDLS
701: EEEMEMYVDL HPITNTSPYT VLETLSLAKA AILFRQLGLR HLCVVPKTPG RPPIVGILTR HDFMPEHVLG LYPHIDPLK
101: LIGLATGLVG FLNNLGVENI AGFKLLLIGN LMLKEKYFQA FFAFAGCNLI LATAAASLCA FIAPAAAGSG IPEVKAYLNG IDAYSILAPS TLFVKIFGSI
201: FGVAAGFVVG KEGPMVHTGA CIANLLGQGG SKKYRLTWKW LRFFKNDRDR RDLITCGAAA GVAAAFRAPV GGVLFALEEA ASWWRNALLW RTFFTTAVVA
301: VVLRSLIEFC RSGRCGLFGK GGLIMFDVNS GPVLYSTPDL LAIVFLGVIG GVLGSLYNYL VDKVLRTYSI INEKGPRFKI MLVMAVSILS SCCAFGLPWL
401: SQCTPCPIGI EEGKCPSVGR SSIYKSFQCP PNHYNDLSSL LLNTNDDAIR NLFTSRSENE FHISTLAIFF VAVYCLGIIT YGIAIPSGLF IPVILAGASY
501: GRLVGRLLGP VSQLDVGLFS LLGAASFLGG TMRMTVSLCV ILLELTNNLL MLPLVMLVLL ISKTVADCFN RGVYDQIVTM KGLPYMEDHA EPYMRNLVAK
601: DVVSGALISF SRVEKVGVIW QALKMTRHNG FPVIDEPPFT EASELCGIAL RSHLLVLLQG KKFSKQRTTF GSQILRSCKA RDFGKAGLGK GLKIEDLDLS
701: EEEMEMYVDL HPITNTSPYT VLETLSLAKA AILFRQLGLR HLCVVPKTPG RPPIVGILTR HDFMPEHVLG LYPHIDPLK
Arabidopsis Description
CLC-CChloride channel protein CLC-c [Source:UniProtKB/Swiss-Prot;Acc:Q96282]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.