Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- plasma membrane 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| OQU85125 | Sorghum | plasma membrane | 94.44 | 95.95 |
| Os02t0558100-02 | Rice | plasma membrane | 87.92 | 90.55 |
| TraesCS3D01G126700.1 | Wheat | plasma membrane | 62.44 | 90.23 |
| TraesCS3A01G125300.1 | Wheat | cytosol, nucleus, plasma membrane | 85.87 | 88.32 |
| TraesCS3B01G144700.1 | Wheat | cytosol, nucleus, plasma membrane | 85.87 | 88.32 |
| TraesCS3D01G126600.1 | Wheat | plasma membrane | 85.63 | 88.07 |
| Zm00001d025474_P003 | Maize | plasma membrane | 83.94 | 87.42 |
| GSMUA_Achr6P24170_001 | Banana | plasma membrane | 72.95 | 83.08 |
| GSMUA_Achr6P07410_001 | Banana | plasma membrane | 76.33 | 82.51 |
| Zm00001d042651_P001 | Maize | plasma membrane | 67.03 | 69.9 |
| Zm00001d039812_P001 | Maize | plasma membrane | 17.87 | 60.41 |
| Zm00001d002091_P002 | Maize | plasma membrane | 54.95 | 60.03 |
| Zm00001d015702_P001 | Maize | plasma membrane | 45.53 | 58.18 |
| Zm00001d046919_P001 | Maize | plasma membrane | 48.31 | 49.94 |
| Zm00001d015700_P001 | Maize | plasma membrane | 12.56 | 47.27 |
| Zm00001d033597_P004 | Maize | plasma membrane | 43.0 | 45.58 |
| Zm00001d003594_P001 | Maize | plasma membrane | 13.65 | 39.1 |
Protein Annotations
| MapMan:24.2.16 | Gene3D:3.10.580.10 | EntrezGene:542114 | UniProt:A0A1D6HAT6 | ProteinID:AQK71817.1 | InterPro:CBS_dom |
| InterPro:Cl-channel_core | InterPro:Cl-channel_volt-gated | InterPro:Cl_channel_pln | GO:GO:0003674 | GO:GO:0005215 | GO:GO:0005216 |
| GO:GO:0005247 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005773 |
| GO:GO:0006810 | GO:GO:0006811 | GO:GO:0006821 | GO:GO:0008150 | GO:GO:0009705 | GO:GO:0016020 |
| GO:GO:0016021 | GO:GO:0034220 | GO:GO:0055085 | GO:GO:1902476 | InterPro:IPR000644 | InterPro:IPR014743 |
| PFAM:PF00571 | PFAM:PF00654 | PRINTS:PR00762 | PRINTS:PR01120 | PFscan:PS51371 | PANTHER:PTHR11689 |
| PANTHER:PTHR11689:SF109 | SMART:SM00116 | SUPFAM:SSF54631 | SUPFAM:SSF81340 | TMHMM:TMhelix | UniParc:UPI0008430A27 |
| EnsemblPlantsGene:Zm00001d016855 | EnsemblPlants:Zm00001d016855_P002 | EnsemblPlants:Zm00001d016855_T002 | SEG:seg | : | : |
Description
Chloride channel
Coordinates
chr5:+:178397600..178406327
Molecular Weight (calculated)
90070.0 Da
IEP (calculated)
8.098
GRAVY (calculated)
0.283
Length
828 amino acids
Sequence
(BLAST)
(BLAST)
001: MDMDGNSPRR PPRRPEREGS YGYDIESMDG SGAGGPPPWS AHHNGSSEAL LRYDDGGADR GSTQQPLLRK RTVNTTSQIA IVGANVCPIE SLDYEVVEND
101: LFKQDWRSRK KKQIFQYIVL KWSLVLLIGL LTGFVGFFNN LAVENIAGFK LLLTSDLMLK GRYIRAFFVY GGCNLVLAAA AAAICAYIAP AAAGSGIPEV
201: KAYLNGVDAY SILAPSTLFV KIFGSILGVS AGFVLGKEGP MVHTGACIAN LLGQGGSRKY HLTCNWLRYF KNDRDRRDLI TCGSAAGVAA AFRAPVGGVL
301: FALEEAASCF SYDERRCFYT SFYRWRSALL WRTFFTTAVV AVVLRGLIEF CRSGKCGLFG QGGLIMFDLS STVAVYSTPD LIAIIVLGII GGIFGGLFNY
401: LLDKILRVYS IINERGAPFK ILLTITISII TSMCSYGLPW LAACTPCPVD AVEQCPTVGR SGNYKNFQCP PGHYNGLASL FFNTNDDAIR NLFSNGTSTE
501: FQMSSLFIFF TAIYCLGLVT YGIAVPSGLF IPVILAGATY GRIVGTLLGS ISDLDPGLFA LLGAASFLGG TMRMTVSVCV ILLELTNDLP MLPLVMLVLL
601: ISKTIADSFN KGVYDQIVVM KGLPYMEAHA EPYMRHLVAG DVVSGPLITF SGVEKVGNIV HALRLTGHNG FPVLDEPPIT ETPELVGLVT RSHLLVLLNS
701: KNFMKGRVKT SGSFVLRRFG AFDFAKPGSG KGLKIEDLDF TDEEMDMYVD LHPITNTSPY TVVETMSLAK AAILFRELGL RHLLVVPKTP DRPPIVGILT
801: RHDFMPEHIH SLFPNLNPHK YHSASMAG
101: LFKQDWRSRK KKQIFQYIVL KWSLVLLIGL LTGFVGFFNN LAVENIAGFK LLLTSDLMLK GRYIRAFFVY GGCNLVLAAA AAAICAYIAP AAAGSGIPEV
201: KAYLNGVDAY SILAPSTLFV KIFGSILGVS AGFVLGKEGP MVHTGACIAN LLGQGGSRKY HLTCNWLRYF KNDRDRRDLI TCGSAAGVAA AFRAPVGGVL
301: FALEEAASCF SYDERRCFYT SFYRWRSALL WRTFFTTAVV AVVLRGLIEF CRSGKCGLFG QGGLIMFDLS STVAVYSTPD LIAIIVLGII GGIFGGLFNY
401: LLDKILRVYS IINERGAPFK ILLTITISII TSMCSYGLPW LAACTPCPVD AVEQCPTVGR SGNYKNFQCP PGHYNGLASL FFNTNDDAIR NLFSNGTSTE
501: FQMSSLFIFF TAIYCLGLVT YGIAVPSGLF IPVILAGATY GRIVGTLLGS ISDLDPGLFA LLGAASFLGG TMRMTVSVCV ILLELTNDLP MLPLVMLVLL
601: ISKTIADSFN KGVYDQIVVM KGLPYMEAHA EPYMRHLVAG DVVSGPLITF SGVEKVGNIV HALRLTGHNG FPVLDEPPIT ETPELVGLVT RSHLLVLLNS
701: KNFMKGRVKT SGSFVLRRFG AFDFAKPGSG KGLKIEDLDF TDEEMDMYVD LHPITNTSPY TVVETMSLAK AAILFRELGL RHLLVVPKTP DRPPIVGILT
801: RHDFMPEHIH SLFPNLNPHK YHSASMAG
001: MVEEDLNQIG GNSNYNGEGG DPESNTLNQP LVKANRTLSS TPLALVGAKV SHIESLDYEI NENDLFKHDW RKRSKAQVLQ YVFLKWTLAC LVGLFTGLIA
101: TLINLAVENI AGYKLLAVGH FLTQERYVTG LMVLVGANLG LTLVASVLCV CFAPTAAGPG IPEIKAYLNG VDTPNMFGAT TMIVKIVGSI GAVAAGLDLG
201: KEGPLVHIGS CIASLLGQGG TDNHRIKWRW LRYFNNDRDR RDLITCGSAA GVCAAFRSPV GGVLFALEEV ATWWRSALLW RTFFSTAVVV VVLREFIEIC
301: NSGKCGLFGK GGLIMFDVSH VTYTYHVTDI IPVMLIGVIG GILGSLYNHL LHKVLRLYNL INEKGKIHKV LLSLTVSLFT SVCLYGLPFL AKCKPCDPSI
401: DEICPTNGRS GNFKQFHCPK GYYNDLATLL LTTNDDAVRN LFSSNTPNEF GMGSLWIFFV LYCILGLFTF GIATPSGLFL PIILMGAAYG RMLGAAMGSY
501: TSIDQGLYAV LGAAALMAGS MRMTVSLCVI FLELTNNLLL LPITMIVLLI AKTVGDSFNP SIYDIILHLK GLPFLEANPE PWMRNLTVGE LGDAKPPVVT
601: LQGVEKVSNI VDVLKNTTHN AFPVLDEAEV PQVGLATGAT ELHGLILRAH LVKVLKKRWF LTEKRRTEEW EVREKFPWDE LAEREDNFDD VAITSAEMEM
701: YVDLHPLTNT TPYTVMENMS VAKALVLFRQ VGLRHLLIVP KIQASGMCPV VGILTRQDLR AYNILQAFPL LEKSKGGKTH
101: TLINLAVENI AGYKLLAVGH FLTQERYVTG LMVLVGANLG LTLVASVLCV CFAPTAAGPG IPEIKAYLNG VDTPNMFGAT TMIVKIVGSI GAVAAGLDLG
201: KEGPLVHIGS CIASLLGQGG TDNHRIKWRW LRYFNNDRDR RDLITCGSAA GVCAAFRSPV GGVLFALEEV ATWWRSALLW RTFFSTAVVV VVLREFIEIC
301: NSGKCGLFGK GGLIMFDVSH VTYTYHVTDI IPVMLIGVIG GILGSLYNHL LHKVLRLYNL INEKGKIHKV LLSLTVSLFT SVCLYGLPFL AKCKPCDPSI
401: DEICPTNGRS GNFKQFHCPK GYYNDLATLL LTTNDDAVRN LFSSNTPNEF GMGSLWIFFV LYCILGLFTF GIATPSGLFL PIILMGAAYG RMLGAAMGSY
501: TSIDQGLYAV LGAAALMAGS MRMTVSLCVI FLELTNNLLL LPITMIVLLI AKTVGDSFNP SIYDIILHLK GLPFLEANPE PWMRNLTVGE LGDAKPPVVT
601: LQGVEKVSNI VDVLKNTTHN AFPVLDEAEV PQVGLATGAT ELHGLILRAH LVKVLKKRWF LTEKRRTEEW EVREKFPWDE LAEREDNFDD VAITSAEMEM
701: YVDLHPLTNT TPYTVMENMS VAKALVLFRQ VGLRHLLIVP KIQASGMCPV VGILTRQDLR AYNILQAFPL LEKSKGGKTH
Arabidopsis Description
CLC-BChloride channel protein [Source:UniProtKB/TrEMBL;Acc:A0A178VKG6]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.