Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- cytosol 1
- plasma membrane 3
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- golgi 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra000596.1-P | Field mustard | plasma membrane | 93.84 | 94.32 |
| Bra022507.1-P | Field mustard | plasma membrane | 93.71 | 94.19 |
| CDX83179 | Canola | plasma membrane | 93.71 | 94.19 |
| CDY16376 | Canola | plasma membrane | 93.71 | 94.19 |
| CDY21447 | Canola | plasma membrane | 93.71 | 94.19 |
| CDX91539 | Canola | plasma membrane | 93.58 | 94.06 |
| Solyc10g044470.1.1 | Tomato | plasma membrane | 76.38 | 77.88 |
| PGSC0003DMT400025239 | Potato | plasma membrane | 77.28 | 77.58 |
| VIT_12s0035g01720.t01 | Wine grape | plasma membrane | 75.87 | 76.06 |
| Solyc01g103140.2.1 | Tomato | plasma membrane | 75.35 | 75.74 |
| PGSC0003DMT400064087 | Potato | plasma membrane | 75.35 | 75.74 |
| EES01847 | Sorghum | cytosol, peroxisome, plasma membrane | 66.5 | 65.16 |
| Zm00001d042651_P001 | Maize | plasma membrane | 65.85 | 64.61 |
| HORVU3Hr1G081920.1 | Barley | plasma membrane, plastid | 62.9 | 62.03 |
| TraesCS3B01G418700.1 | Wheat | mitochondrion | 63.16 | 61.89 |
| TraesCS3D01G379600.1 | Wheat | plasma membrane, plastid | 62.77 | 61.59 |
| TraesCS3A01G390100.1 | Wheat | plasma membrane, plastid | 62.77 | 61.51 |
| AT5G33280.1 | Thale cress | plasma membrane | 59.18 | 60.26 |
| Os01t0876100-00 | Rice | plasma membrane | 66.11 | 59.06 |
| AT3G27170.1 | Thale cress | plasma membrane | 51.48 | 51.41 |
| AT5G40890.1 | Thale cress | plasma membrane | 50.71 | 50.97 |
| AT5G26240.1 | Thale cress | plasma membrane | 45.06 | 44.32 |
Protein Annotations
| MapMan:24.2.16 | Gene3D:3.10.580.10 | EntrezGene:835052 | ProteinID:AED95868.1 | ArrayExpress:AT5G49890 | EnsemblPlantsGene:AT5G49890 |
| RefSeq:AT5G49890 | TAIR:AT5G49890 | RefSeq:AT5G49890-TAIR-G | EnsemblPlants:AT5G49890.1 | TAIR:AT5G49890.1 | EMBL:AY120754 |
| Unigene:At.16 | ProteinID:BAA97010.1 | EMBL:BT001211 | InterPro:CBS_dom | Symbol:CLC-C | InterPro:Cl-channel_core |
| InterPro:Cl-channel_volt-gated | InterPro:Cl_channel_pln | GO:GO:0003674 | GO:GO:0005215 | GO:GO:0005216 | GO:GO:0005244 |
| GO:GO:0005247 | GO:GO:0005254 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005773 | GO:GO:0005774 | GO:GO:0006810 | GO:GO:0006811 |
| GO:GO:0006821 | GO:GO:0008150 | GO:GO:0009705 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0034220 |
| GO:GO:0034707 | GO:GO:0034765 | GO:GO:0055085 | GO:GO:1902476 | InterPro:IPR000644 | InterPro:IPR014743 |
| RefSeq:NP_199800.1 | PFAM:PF00571 | PFAM:PF00654 | PO:PO:0000005 | PO:PO:0000013 | PO:PO:0000037 |
| PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001017 | PO:PO:0001054 |
| PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 |
| PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 |
| PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 |
| PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 |
| PO:PO:0025195 | PO:PO:0025281 | PRINTS:PR00762 | PRINTS:PR01120 | PFscan:PS51371 | PANTHER:PTHR11689 |
| PANTHER:PTHR11689:SF105 | UniProt:Q96282 | SMART:SM00116 | SUPFAM:SSF54631 | SUPFAM:SSF81340 | TMHMM:TMhelix |
| UniParc:UPI00000ABFA3 | EMBL:Y09095 | EMBL:Z71447 | SEG:seg | : | : |
Description
CLC-CChloride channel protein CLC-c [Source:UniProtKB/Swiss-Prot;Acc:Q96282]
Coordinates
chr5:-:20288055..20292432
Molecular Weight (calculated)
85236.9 Da
IEP (calculated)
8.463
GRAVY (calculated)
0.352
Length
779 amino acids
Sequence
(BLAST)
(BLAST)
001: MDDRHEGDHH DIEVEGGALH GFERKISGIL DDGSVGFRQP LLARNRKNTT SQIAIVGANT CPIESLDYEI FENDFFKQDW RSRKKIEILQ YTFLKWALAF
101: LIGLATGLVG FLNNLGVENI AGFKLLLIGN LMLKEKYFQA FFAFAGCNLI LATAAASLCA FIAPAAAGSG IPEVKAYLNG IDAYSILAPS TLFVKIFGSI
201: FGVAAGFVVG KEGPMVHTGA CIANLLGQGG SKKYRLTWKW LRFFKNDRDR RDLITCGAAA GVAAAFRAPV GGVLFALEEA ASWWRNALLW RTFFTTAVVA
301: VVLRSLIEFC RSGRCGLFGK GGLIMFDVNS GPVLYSTPDL LAIVFLGVIG GVLGSLYNYL VDKVLRTYSI INEKGPRFKI MLVMAVSILS SCCAFGLPWL
401: SQCTPCPIGI EEGKCPSVGR SSIYKSFQCP PNHYNDLSSL LLNTNDDAIR NLFTSRSENE FHISTLAIFF VAVYCLGIIT YGIAIPSGLF IPVILAGASY
501: GRLVGRLLGP VSQLDVGLFS LLGAASFLGG TMRMTVSLCV ILLELTNNLL MLPLVMLVLL ISKTVADCFN RGVYDQIVTM KGLPYMEDHA EPYMRNLVAK
601: DVVSGALISF SRVEKVGVIW QALKMTRHNG FPVIDEPPFT EASELCGIAL RSHLLVLLQG KKFSKQRTTF GSQILRSCKA RDFGKAGLGK GLKIEDLDLS
701: EEEMEMYVDL HPITNTSPYT VLETLSLAKA AILFRQLGLR HLCVVPKTPG RPPIVGILTR HDFMPEHVLG LYPHIDPLK
101: LIGLATGLVG FLNNLGVENI AGFKLLLIGN LMLKEKYFQA FFAFAGCNLI LATAAASLCA FIAPAAAGSG IPEVKAYLNG IDAYSILAPS TLFVKIFGSI
201: FGVAAGFVVG KEGPMVHTGA CIANLLGQGG SKKYRLTWKW LRFFKNDRDR RDLITCGAAA GVAAAFRAPV GGVLFALEEA ASWWRNALLW RTFFTTAVVA
301: VVLRSLIEFC RSGRCGLFGK GGLIMFDVNS GPVLYSTPDL LAIVFLGVIG GVLGSLYNYL VDKVLRTYSI INEKGPRFKI MLVMAVSILS SCCAFGLPWL
401: SQCTPCPIGI EEGKCPSVGR SSIYKSFQCP PNHYNDLSSL LLNTNDDAIR NLFTSRSENE FHISTLAIFF VAVYCLGIIT YGIAIPSGLF IPVILAGASY
501: GRLVGRLLGP VSQLDVGLFS LLGAASFLGG TMRMTVSLCV ILLELTNNLL MLPLVMLVLL ISKTVADCFN RGVYDQIVTM KGLPYMEDHA EPYMRNLVAK
601: DVVSGALISF SRVEKVGVIW QALKMTRHNG FPVIDEPPFT EASELCGIAL RSHLLVLLQG KKFSKQRTTF GSQILRSCKA RDFGKAGLGK GLKIEDLDLS
701: EEEMEMYVDL HPITNTSPYT VLETLSLAKA AILFRQLGLR HLCVVPKTPG RPPIVGILTR HDFMPEHVLG LYPHIDPLK
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.