Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 2
- plasma membrane 4
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc10g044470.1.1 | Tomato | plasma membrane | 97.55 | 99.08 |
| PGSC0003DMT400064087 | Potato | plasma membrane | 86.08 | 86.19 |
| Bra000596.1-P | Field mustard | plasma membrane | 77.84 | 77.94 |
| CDX83179 | Canola | plasma membrane | 77.71 | 77.81 |
| CDY21447 | Canola | plasma membrane | 77.71 | 77.81 |
| AT5G49890.1 | Thale cress | plasma membrane | 77.58 | 77.28 |
| Bra022507.1-P | Field mustard | plasma membrane | 77.06 | 77.16 |
| CDY16376 | Canola | plasma membrane | 77.06 | 77.16 |
| CDX91539 | Canola | plasma membrane | 76.93 | 77.03 |
| VIT_12s0035g01720.t01 | Wine grape | plasma membrane | 76.8 | 76.71 |
| EES01847 | Sorghum | cytosol, peroxisome, plasma membrane | 67.78 | 66.16 |
| Zm00001d042651_P001 | Maize | plasma membrane | 67.4 | 65.87 |
| HORVU3Hr1G081920.1 | Barley | plasma membrane, plastid | 65.72 | 64.56 |
| TraesCS3B01G418700.1 | Wheat | mitochondrion | 65.59 | 64.03 |
| TraesCS3D01G379600.1 | Wheat | plasma membrane, plastid | 65.34 | 63.85 |
| TraesCS3A01G390100.1 | Wheat | plasma membrane, plastid | 64.95 | 63.4 |
| PGSC0003DMT400078919 | Potato | plasma membrane | 61.21 | 61.93 |
| Os01t0876100-00 | Rice | plasma membrane | 66.49 | 59.17 |
| PGSC0003DMT400017962 | Potato | peroxisome, plasma membrane, vacuole | 52.96 | 52.42 |
| PGSC0003DMT400052072 | Potato | plasma membrane | 51.29 | 51.42 |
Protein Annotations
| MapMan:24.2.16 | Gene3D:3.10.580.10 | ProteinID:CAA71369 | ProteinID:CAA71369.1 | InterPro:CBS_dom | InterPro:Cl-channel_core |
| InterPro:Cl-channel_volt-gated | InterPro:Cl_channel_pln | GO:GO:0003674 | GO:GO:0005215 | GO:GO:0005216 | GO:GO:0005247 |
| GO:GO:0005575 | GO:GO:0006810 | GO:GO:0006811 | GO:GO:0006821 | GO:GO:0008150 | GO:GO:0016020 |
| GO:GO:0016021 | GO:GO:0034220 | GO:GO:0055085 | GO:GO:1902476 | InterPro:IPR000644 | InterPro:IPR014743 |
| UniProt:M1AL73 | PFAM:PF00571 | PFAM:PF00654 | EnsemblPlantsGene:PGSC0003DMG400009752 | PGSC:PGSC0003DMG400009752 | EnsemblPlants:PGSC0003DMT400025239 |
| PRINTS:PR00762 | PRINTS:PR01120 | PFscan:PS51371 | PANTHER:PTHR11689 | PANTHER:PTHR11689:SF105 | SUPFAM:SSF54631 |
| SUPFAM:SSF81340 | TMHMM:TMhelix | UniParc:UPI0002967AE1 | EMBL:Y10338 | SEG:seg | : |
Description
Chloride channel Stclc1 [Source:PGSC_GENE;Acc:PGSC0003DMG400009752]
Coordinates
chr10:+:17626408..17631399
Molecular Weight (calculated)
84730.1 Da
IEP (calculated)
8.259
GRAVY (calculated)
0.394
Length
776 amino acids
Sequence
(BLAST)
(BLAST)
001: MENQVDIEND GGMIEEEKFD LERNFSTISE SGSIRVPLLK SKSRVNNTSQ IAIVGANVYP IESLDYDIVE NDLFKQDWRS RKKVEIFQYI FLKWTLVLLI
101: GLSTGLVGFF NNIGVENIAG FKLLLTSNLM LDGKYFQAFA AFAGCNVFFA TCAAALCAFI APAAAGSGIP EVKAYLNGID AHSILAPSTL LVKIFGSILG
201: VSAGFVVGKE GPMVHTGACI ANLLGQGGSR KYHLTWKWLK YFKNDRDRRD LITCGAAAGV AAAFRAPVGG VLFALEEIAS WWRSALLWRT FFTTAIVAMV
301: LRSLIQFCRG GNCGLFGQGG LIMFDVNSGV SNYNTIDVLA LIFIGVLGGL LGSLYNYLVD KVLRTYAVIN ERGPAFKILL VMSVSILTSC CSYGLPWFAG
401: CIPCPVGLEE KCPTIGRSGN YKNFQCPAGH YNDLASLFLN TNDDAIRNLF SSNNSNEFHI STLLIFFAGV YCLGIITYGI AIPSGLFIPV ILAGASYGRI
501: FGRALGSLSN LNVGLFSLLG AASFLGGTMR MTVSICVILL ELTNNLLMLP LVMLVLLISK TVADIFNKGV YDQIVKMKGL PFLEAHAEPF MRNLVAGDVC
601: SGPLLSFSGV EKVGNIVHAL KYTRHNGFPV IDEPPFSETP ELCGLVLRSH LLVLLNGKKF TKQRVLSASN ILSRFHAFDF AKPGSGKGLK FEDLVITEEE
701: MEMYIDLHPI TNTSPYTVVE TMSLAKAAIL FRQLGLRHLC VVPKKTGRAP IVGILTRHDF MHEHISNLYP HLVPHK
101: GLSTGLVGFF NNIGVENIAG FKLLLTSNLM LDGKYFQAFA AFAGCNVFFA TCAAALCAFI APAAAGSGIP EVKAYLNGID AHSILAPSTL LVKIFGSILG
201: VSAGFVVGKE GPMVHTGACI ANLLGQGGSR KYHLTWKWLK YFKNDRDRRD LITCGAAAGV AAAFRAPVGG VLFALEEIAS WWRSALLWRT FFTTAIVAMV
301: LRSLIQFCRG GNCGLFGQGG LIMFDVNSGV SNYNTIDVLA LIFIGVLGGL LGSLYNYLVD KVLRTYAVIN ERGPAFKILL VMSVSILTSC CSYGLPWFAG
401: CIPCPVGLEE KCPTIGRSGN YKNFQCPAGH YNDLASLFLN TNDDAIRNLF SSNNSNEFHI STLLIFFAGV YCLGIITYGI AIPSGLFIPV ILAGASYGRI
501: FGRALGSLSN LNVGLFSLLG AASFLGGTMR MTVSICVILL ELTNNLLMLP LVMLVLLISK TVADIFNKGV YDQIVKMKGL PFLEAHAEPF MRNLVAGDVC
601: SGPLLSFSGV EKVGNIVHAL KYTRHNGFPV IDEPPFSETP ELCGLVLRSH LLVLLNGKKF TKQRVLSASN ILSRFHAFDF AKPGSGKGLK FEDLVITEEE
701: MEMYIDLHPI TNTSPYTVVE TMSLAKAAIL FRQLGLRHLC VVPKKTGRAP IVGILTRHDF MHEHISNLYP HLVPHK
001: MDDRHEGDHH DIEVEGGALH GFERKISGIL DDGSVGFRQP LLARNRKNTT SQIAIVGANT CPIESLDYEI FENDFFKQDW RSRKKIEILQ YTFLKWALAF
101: LIGLATGLVG FLNNLGVENI AGFKLLLIGN LMLKEKYFQA FFAFAGCNLI LATAAASLCA FIAPAAAGSG IPEVKAYLNG IDAYSILAPS TLFVKIFGSI
201: FGVAAGFVVG KEGPMVHTGA CIANLLGQGG SKKYRLTWKW LRFFKNDRDR RDLITCGAAA GVAAAFRAPV GGVLFALEEA ASWWRNALLW RTFFTTAVVA
301: VVLRSLIEFC RSGRCGLFGK GGLIMFDVNS GPVLYSTPDL LAIVFLGVIG GVLGSLYNYL VDKVLRTYSI INEKGPRFKI MLVMAVSILS SCCAFGLPWL
401: SQCTPCPIGI EEGKCPSVGR SSIYKSFQCP PNHYNDLSSL LLNTNDDAIR NLFTSRSENE FHISTLAIFF VAVYCLGIIT YGIAIPSGLF IPVILAGASY
501: GRLVGRLLGP VSQLDVGLFS LLGAASFLGG TMRMTVSLCV ILLELTNNLL MLPLVMLVLL ISKTVADCFN RGVYDQIVTM KGLPYMEDHA EPYMRNLVAK
601: DVVSGALISF SRVEKVGVIW QALKMTRHNG FPVIDEPPFT EASELCGIAL RSHLLVLLQG KKFSKQRTTF GSQILRSCKA RDFGKAGLGK GLKIEDLDLS
701: EEEMEMYVDL HPITNTSPYT VLETLSLAKA AILFRQLGLR HLCVVPKTPG RPPIVGILTR HDFMPEHVLG LYPHIDPLK
101: LIGLATGLVG FLNNLGVENI AGFKLLLIGN LMLKEKYFQA FFAFAGCNLI LATAAASLCA FIAPAAAGSG IPEVKAYLNG IDAYSILAPS TLFVKIFGSI
201: FGVAAGFVVG KEGPMVHTGA CIANLLGQGG SKKYRLTWKW LRFFKNDRDR RDLITCGAAA GVAAAFRAPV GGVLFALEEA ASWWRNALLW RTFFTTAVVA
301: VVLRSLIEFC RSGRCGLFGK GGLIMFDVNS GPVLYSTPDL LAIVFLGVIG GVLGSLYNYL VDKVLRTYSI INEKGPRFKI MLVMAVSILS SCCAFGLPWL
401: SQCTPCPIGI EEGKCPSVGR SSIYKSFQCP PNHYNDLSSL LLNTNDDAIR NLFTSRSENE FHISTLAIFF VAVYCLGIIT YGIAIPSGLF IPVILAGASY
501: GRLVGRLLGP VSQLDVGLFS LLGAASFLGG TMRMTVSLCV ILLELTNNLL MLPLVMLVLL ISKTVADCFN RGVYDQIVTM KGLPYMEDHA EPYMRNLVAK
601: DVVSGALISF SRVEKVGVIW QALKMTRHNG FPVIDEPPFT EASELCGIAL RSHLLVLLQG KKFSKQRTTF GSQILRSCKA RDFGKAGLGK GLKIEDLDLS
701: EEEMEMYVDL HPITNTSPYT VLETLSLAKA AILFRQLGLR HLCVVPKTPG RPPIVGILTR HDFMPEHVLG LYPHIDPLK
Arabidopsis Description
CLC-CChloride channel protein CLC-c [Source:UniProtKB/Swiss-Prot;Acc:Q96282]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.