Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- cytosol 1
- plasma membrane 5
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- golgi 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc01g103140.2.1 | Tomato | plasma membrane | 97.68 | 97.68 |
| PGSC0003DMT400025239 | Potato | plasma membrane | 86.19 | 86.08 |
| VIT_12s0035g01720.t01 | Wine grape | plasma membrane | 77.81 | 77.61 |
| Bra000596.1-P | Field mustard | plasma membrane | 76.0 | 76.0 |
| CDX83179 | Canola | plasma membrane | 75.87 | 75.87 |
| CDY21447 | Canola | plasma membrane | 75.87 | 75.87 |
| Bra022507.1-P | Field mustard | plasma membrane | 75.74 | 75.74 |
| CDY16376 | Canola | plasma membrane | 75.74 | 75.74 |
| CDX91539 | Canola | plasma membrane | 75.48 | 75.48 |
| AT5G49890.1 | Thale cress | plasma membrane | 75.74 | 75.35 |
| EES01847 | Sorghum | cytosol, peroxisome, plasma membrane | 68.65 | 66.92 |
| Zm00001d042651_P001 | Maize | plasma membrane | 68.0 | 66.37 |
| HORVU3Hr1G081920.1 | Barley | plasma membrane, plastid | 65.42 | 64.18 |
| TraesCS3B01G418700.1 | Wheat | mitochondrion | 65.68 | 64.03 |
| TraesCS3D01G379600.1 | Wheat | plasma membrane, plastid | 65.42 | 63.85 |
| TraesCS3A01G390100.1 | Wheat | plasma membrane, plastid | 64.9 | 63.27 |
| PGSC0003DMT400078919 | Potato | plasma membrane | 61.42 | 62.06 |
| Os01t0876100-00 | Rice | plasma membrane | 66.32 | 58.95 |
| PGSC0003DMT400017962 | Potato | peroxisome, plasma membrane, vacuole | 52.9 | 52.3 |
| PGSC0003DMT400052072 | Potato | plasma membrane | 50.45 | 50.52 |
Protein Annotations
| MapMan:24.2.16 | Gene3D:3.10.580.10 | InterPro:CBS_dom | InterPro:Cl-channel_core | InterPro:Cl-channel_volt-gated | InterPro:Cl_channel_pln |
| GO:GO:0003674 | GO:GO:0005215 | GO:GO:0005216 | GO:GO:0005247 | GO:GO:0005575 | GO:GO:0006810 |
| GO:GO:0006811 | GO:GO:0006821 | GO:GO:0008150 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0034220 |
| GO:GO:0055085 | GO:GO:1902476 | InterPro:IPR000644 | InterPro:IPR014743 | UniProt:M1CBP9 | PFAM:PF00571 |
| PFAM:PF00654 | EnsemblPlantsGene:PGSC0003DMG400024904 | PGSC:PGSC0003DMG400024904 | EnsemblPlants:PGSC0003DMT400064087 | PRINTS:PR00762 | PRINTS:PR01120 |
| PFscan:PS51371 | PANTHER:PTHR11689 | PANTHER:PTHR11689:SF105 | SMART:SM00116 | SUPFAM:SSF54631 | SUPFAM:SSF81340 |
| TMHMM:TMhelix | UniParc:UPI000295E417 | SEG:seg | : | : | : |
Description
C1C-Nt1 protein [Source:PGSC_GENE;Acc:PGSC0003DMG400024904]
Coordinates
chr1:-:79892180..79899199
Molecular Weight (calculated)
84325.5 Da
IEP (calculated)
8.308
GRAVY (calculated)
0.363
Length
775 amino acids
Sequence
(BLAST)
(BLAST)
001: MRDQEDIENE GVGVMVMEDG KDLERNISSA SGFREPLLKS KSRVNNTSQI AIIGANVCPI ESLDYDIVEN DLFKQDWRSR KKVQIYQYIF LKWTLVLLIG
101: LSTGLVGFFL NIAVENIAGF KLLLASDLML EDKYFRAFGT FAGCNLGLAT CAAILCAFIA PAAAGSGIPE VKAYLNGVDA HSILAPSTLF VKIIGSVLGV
201: SAGFVVGKEG PMVHTGACIA NLLGQGGSRK YHLTWKWLRY FKNDRDRRDL ITCGAAAGVA AAFRAPVGGV LFALEEVASW WRSALLWRTF FTTAIVAMVL
301: RSCIQFCRSG NCGLFGQGGL IMFDVNSGSP NYNTVDVLAV LTIGVLGGLL GSLYNYLVDK VLRTYSIINE RGPAFKVMLV MTISILTSLC SYGLPWFASC
401: TPCPVGLEEK CPTVGRSGNY KNFQCPAGHY NDLASLFMNT NDDAIRNLFS AENSSEFHLS TLFVFFAGVY CLGVITYGIA IPSGLFIPVI LAGASYGRLV
501: GSVLGSVSNL NNGLFALLGA ASFLGGTMRM TVSLCVILLE LTNNLLMLPL VMLVLLVSKT VADSFNKGVY DQIVKMKGLP YLEAHAEPYM RQLAAGDVCS
601: GPLVTFSGVE KVGNIVHALK FTRHNGFPVV DLPPFSDAPE FCGLVLRSHL VVLLKGKTFT KLSVLSGSNI LKRFHAFDFA KPGSGKGLKF EDLSFSPEEM
701: EMYVDLHPIT NTSPYTVVET MSLAKAAILF RELGLRHLCV VPKTTKRNPI VGILTRHDFM PEHIKGLYPH LVHHK
101: LSTGLVGFFL NIAVENIAGF KLLLASDLML EDKYFRAFGT FAGCNLGLAT CAAILCAFIA PAAAGSGIPE VKAYLNGVDA HSILAPSTLF VKIIGSVLGV
201: SAGFVVGKEG PMVHTGACIA NLLGQGGSRK YHLTWKWLRY FKNDRDRRDL ITCGAAAGVA AAFRAPVGGV LFALEEVASW WRSALLWRTF FTTAIVAMVL
301: RSCIQFCRSG NCGLFGQGGL IMFDVNSGSP NYNTVDVLAV LTIGVLGGLL GSLYNYLVDK VLRTYSIINE RGPAFKVMLV MTISILTSLC SYGLPWFASC
401: TPCPVGLEEK CPTVGRSGNY KNFQCPAGHY NDLASLFMNT NDDAIRNLFS AENSSEFHLS TLFVFFAGVY CLGVITYGIA IPSGLFIPVI LAGASYGRLV
501: GSVLGSVSNL NNGLFALLGA ASFLGGTMRM TVSLCVILLE LTNNLLMLPL VMLVLLVSKT VADSFNKGVY DQIVKMKGLP YLEAHAEPYM RQLAAGDVCS
601: GPLVTFSGVE KVGNIVHALK FTRHNGFPVV DLPPFSDAPE FCGLVLRSHL VVLLKGKTFT KLSVLSGSNI LKRFHAFDFA KPGSGKGLKF EDLSFSPEEM
701: EMYVDLHPIT NTSPYTVVET MSLAKAAILF RELGLRHLCV VPKTTKRNPI VGILTRHDFM PEHIKGLYPH LVHHK
001: MDDRHEGDHH DIEVEGGALH GFERKISGIL DDGSVGFRQP LLARNRKNTT SQIAIVGANT CPIESLDYEI FENDFFKQDW RSRKKIEILQ YTFLKWALAF
101: LIGLATGLVG FLNNLGVENI AGFKLLLIGN LMLKEKYFQA FFAFAGCNLI LATAAASLCA FIAPAAAGSG IPEVKAYLNG IDAYSILAPS TLFVKIFGSI
201: FGVAAGFVVG KEGPMVHTGA CIANLLGQGG SKKYRLTWKW LRFFKNDRDR RDLITCGAAA GVAAAFRAPV GGVLFALEEA ASWWRNALLW RTFFTTAVVA
301: VVLRSLIEFC RSGRCGLFGK GGLIMFDVNS GPVLYSTPDL LAIVFLGVIG GVLGSLYNYL VDKVLRTYSI INEKGPRFKI MLVMAVSILS SCCAFGLPWL
401: SQCTPCPIGI EEGKCPSVGR SSIYKSFQCP PNHYNDLSSL LLNTNDDAIR NLFTSRSENE FHISTLAIFF VAVYCLGIIT YGIAIPSGLF IPVILAGASY
501: GRLVGRLLGP VSQLDVGLFS LLGAASFLGG TMRMTVSLCV ILLELTNNLL MLPLVMLVLL ISKTVADCFN RGVYDQIVTM KGLPYMEDHA EPYMRNLVAK
601: DVVSGALISF SRVEKVGVIW QALKMTRHNG FPVIDEPPFT EASELCGIAL RSHLLVLLQG KKFSKQRTTF GSQILRSCKA RDFGKAGLGK GLKIEDLDLS
701: EEEMEMYVDL HPITNTSPYT VLETLSLAKA AILFRQLGLR HLCVVPKTPG RPPIVGILTR HDFMPEHVLG LYPHIDPLK
101: LIGLATGLVG FLNNLGVENI AGFKLLLIGN LMLKEKYFQA FFAFAGCNLI LATAAASLCA FIAPAAAGSG IPEVKAYLNG IDAYSILAPS TLFVKIFGSI
201: FGVAAGFVVG KEGPMVHTGA CIANLLGQGG SKKYRLTWKW LRFFKNDRDR RDLITCGAAA GVAAAFRAPV GGVLFALEEA ASWWRNALLW RTFFTTAVVA
301: VVLRSLIEFC RSGRCGLFGK GGLIMFDVNS GPVLYSTPDL LAIVFLGVIG GVLGSLYNYL VDKVLRTYSI INEKGPRFKI MLVMAVSILS SCCAFGLPWL
401: SQCTPCPIGI EEGKCPSVGR SSIYKSFQCP PNHYNDLSSL LLNTNDDAIR NLFTSRSENE FHISTLAIFF VAVYCLGIIT YGIAIPSGLF IPVILAGASY
501: GRLVGRLLGP VSQLDVGLFS LLGAASFLGG TMRMTVSLCV ILLELTNNLL MLPLVMLVLL ISKTVADCFN RGVYDQIVTM KGLPYMEDHA EPYMRNLVAK
601: DVVSGALISF SRVEKVGVIW QALKMTRHNG FPVIDEPPFT EASELCGIAL RSHLLVLLQG KKFSKQRTTF GSQILRSCKA RDFGKAGLGK GLKIEDLDLS
701: EEEMEMYVDL HPITNTSPYT VLETLSLAKA AILFRQLGLR HLCVVPKTPG RPPIVGILTR HDFMPEHVLG LYPHIDPLK
Arabidopsis Description
CLC-CChloride channel protein CLC-c [Source:UniProtKB/Swiss-Prot;Acc:Q96282]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.