Factsheet for Bra000596.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
plasma membrane 5
extracellular 1
endoplasmic reticulum 1
vacuole 1
golgi 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	nucleus, peroxisome, secretory
BaCelLo:	nucleus
MultiLoc:	plasma membrane
Plant-mPloc:	plasma membrane
PProwler:	secretory
PTS1:	peroxisome
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX83179	Canola	plasma membrane	99.87	99.87
CDY21447	Canola	plasma membrane	99.87	99.87
Bra022507.1-P	Field mustard	plasma membrane	97.55	97.55
AT5G49890.1	Thale cress	plasma membrane	94.32	93.84
Solyc10g044470.1.1	Tomato	plasma membrane	76.9	78.01
PGSC0003DMT400025239	Potato	plasma membrane	77.94	77.84
PGSC0003DMT400064087	Potato	plasma membrane	76.0	76.0
VIT_12s0035g01720.t01	Wine grape	plasma membrane	76.0	75.8
Solyc01g103140.2.1	Tomato	plasma membrane	75.61	75.61
EES01847	Sorghum	cytosol, peroxisome, plasma membrane	66.97	65.28
Zm00001d042651_P001	Maize	plasma membrane	66.06	64.48
HORVU3Hr1G081920.1	Barley	plasma membrane, plastid	63.48	62.28
TraesCS3B01G418700.1	Wheat	mitochondrion	63.87	62.26
TraesCS3D01G379600.1	Wheat	plasma membrane, plastid	63.48	61.96
TraesCS3A01G390100.1	Wheat	plasma membrane, plastid	63.48	61.89
Os01t0876100-00	Rice	plasma membrane	66.06	58.72
Bra038948.1-P	Field mustard	plasma membrane	57.68	58.51
Bra028478.1-P	Field mustard	plasma membrane	51.61	51.95
Bra025253.1-P	Field mustard	plasma membrane	52.26	51.72
Bra032985.1-P	Field mustard	plasma membrane	52.13	51.6
Bra030328.1-P	Field mustard	plasma membrane	51.1	51.03
Bra009891.1-P	Field mustard	plasma membrane	45.03	44.07

Protein Annotations

MapMan:24.2.16	Gene3D:3.10.580.10	EnsemblPlantsGene:Bra000596	EnsemblPlants:Bra000596.1	EnsemblPlants:Bra000596.1-P	InterPro:CBS_dom
InterPro:Cl-channel_core	InterPro:Cl-channel_volt-gated	InterPro:Cl_channel_pln	GO:GO:0003674	GO:GO:0005215	GO:GO:0005216
GO:GO:0005247	GO:GO:0005575	GO:GO:0006810	GO:GO:0006811	GO:GO:0006821	GO:GO:0008150
GO:GO:0016020	GO:GO:0016021	GO:GO:0034220	GO:GO:0055085	GO:GO:1902476	InterPro:IPR000644
InterPro:IPR014743	UniProt:M4C8R8	PFAM:PF00571	PFAM:PF00654	PRINTS:PR00762	PRINTS:PR01120
PFscan:PS51371	PANTHER:PTHR11689	PANTHER:PTHR11689:SF105	SUPFAM:SSF54631	SUPFAM:SSF81340	TMHMM:TMhelix
UniParc:UPI000254018D	SEG:seg	:	:	:	:

Description

AT5G49890 (E=0.0) CLC-C, ATCLC-C | CLC-C (CHLORIDE CHANNEL C); anion channel/ voltage-gated chloride channel

Coordinates

chrA03:-:11976333..11979323

Molecular Weight (calculated)

84448.0 Da

IEP (calculated)

8.571

GRAVY (calculated)

0.386

Length

775 amino acids

Sequence
(BLAST)

001: MDDRSENHDI EVEGGNYAYE RKISGILDDG SVGFQQPLLA RNRKNTTSQI AIVGANTCPI ESLDYEIFEN DLFKQDWRSR KKIEILQYTI LKWALAFLIG
101: LSTGLVGFLN NLAVENIAGF KLLLTGNLML KEKYFQAFFA FAGCNLILAT AAASLCAFIA PAAAGSGIPE VKAYLNGIDA YSILAPSTLF VKIFGSIFGV
201: AAGFVVGKEG PMVHTGACIA NLLGQGGSRK YKLTWKWLRF FKNDRDRRDL ITCGAAAGVA AAFRAPVGGV LFALEEAASW WRSALLWRTF FTTAVVAVVL
301: RSLIELCRSG RCGLFGKGGL IMFDVNSGPV LYSTPDLLAV VFLGVVGGVL GSLYNYLVDK VLRTYALINE RGPGFKVMLV MAVSILSSCC AFGLPWLSPC
401: TPCPVGTEGK CPSVGRAGIY KSFQCPPNHY NDLSSLLLNT NDDAIRSLFT SRSENEFQIS TLAIFFFFVY FLGIITYGIA IPSGLFIPVI LAGASYGRLV
501: GRLLGPVSQL DVGLFSLLGA ASFLGGTMRM TVSLCVILLE LTNNLLMLPL VMLVLLISKT VADCFNKGVY DQIVTMKGLP YMEDHAEPYM RNLVAKDVVA
601: GPLLSFSRVE KVGVIWQALK MTSHNGFPVI DEPPFTEASE LCGIALRSHL LVLLQGKRFS KQKTTFGSQI LRSCKARDFA KAGLGKGLKI EDLVISGEEM
701: EMYVDLHPIT NTSPYTVLET LSLAKAAILF RQLGLRHLCV VPKTPGRPPI VGILTRHDFM PEHVLGLYPH IDPLK

Best Arabidopsis Sequence Match ( AT5G49890.1 )
(BLAST)

001: MDDRHEGDHH DIEVEGGALH GFERKISGIL DDGSVGFRQP LLARNRKNTT SQIAIVGANT CPIESLDYEI FENDFFKQDW RSRKKIEILQ YTFLKWALAF
101: LIGLATGLVG FLNNLGVENI AGFKLLLIGN LMLKEKYFQA FFAFAGCNLI LATAAASLCA FIAPAAAGSG IPEVKAYLNG IDAYSILAPS TLFVKIFGSI
201: FGVAAGFVVG KEGPMVHTGA CIANLLGQGG SKKYRLTWKW LRFFKNDRDR RDLITCGAAA GVAAAFRAPV GGVLFALEEA ASWWRNALLW RTFFTTAVVA
301: VVLRSLIEFC RSGRCGLFGK GGLIMFDVNS GPVLYSTPDL LAIVFLGVIG GVLGSLYNYL VDKVLRTYSI INEKGPRFKI MLVMAVSILS SCCAFGLPWL
401: SQCTPCPIGI EEGKCPSVGR SSIYKSFQCP PNHYNDLSSL LLNTNDDAIR NLFTSRSENE FHISTLAIFF VAVYCLGIIT YGIAIPSGLF IPVILAGASY
501: GRLVGRLLGP VSQLDVGLFS LLGAASFLGG TMRMTVSLCV ILLELTNNLL MLPLVMLVLL ISKTVADCFN RGVYDQIVTM KGLPYMEDHA EPYMRNLVAK
601: DVVSGALISF SRVEKVGVIW QALKMTRHNG FPVIDEPPFT EASELCGIAL RSHLLVLLQG KKFSKQRTTF GSQILRSCKA RDFGKAGLGK GLKIEDLDLS
701: EEEMEMYVDL HPITNTSPYT VLETLSLAKA AILFRQLGLR HLCVVPKTPG RPPIVGILTR HDFMPEHVLG LYPHIDPLK

Arabidopsis Description

CLC-CChloride channel protein CLC-c [Source:UniProtKB/Swiss-Prot;Acc:Q96282]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.