Factsheet for TraesCS3D01G379600.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, plastid

Predictor Summary:

plastid 2
mitochondrion 3
cytosol 1
plasma membrane 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3A01G390100.1	Wheat	plasma membrane, plastid	98.11	97.99
TraesCS3B01G418700.1	Wheat	mitochondrion	97.73	97.61
HORVU3Hr1G081920.1	Barley	plasma membrane, plastid	94.46	94.94
Zm00001d042651_P001	Maize	plasma membrane	78.34	78.34
EES01847	Sorghum	cytosol, peroxisome, plasma membrane	77.58	77.48
Os01t0876100-00	Rice	plasma membrane	78.34	71.33
TraesCS3D01G126700.1	Wheat	plasma membrane	47.86	66.32
TraesCS2D01G308100.1	Wheat	plasma membrane	67.13	66.21
Solyc10g044470.1.1	Tomato	plasma membrane	63.6	66.1
VIT_12s0035g01720.t01	Wine grape	plasma membrane	64.61	66.02
VIT_07s0130g00400.t01	Wine grape	cytosol	64.74	65.9
Solyc01g103140.2.1	Tomato	plasma membrane	63.85	65.42
PGSC0003DMT400064087	Potato	plasma membrane	63.85	65.42
PGSC0003DMT400025239	Potato	plasma membrane	63.85	65.34
TraesCS3D01G126600.1	Wheat	plasma membrane	64.48	63.6
CDY21447	Canola	plasma membrane	61.96	63.48
Bra000596.1-P	Field mustard	plasma membrane	61.96	63.48
CDX83179	Canola	plasma membrane	61.84	63.35
CDY16376	Canola	plasma membrane	61.59	63.1
CDX91539	Canola	plasma membrane	61.59	63.1
Bra022507.1-P	Field mustard	plasma membrane	61.59	63.1
AT5G49890.1	Thale cress	plasma membrane	61.59	62.77
KRH38787	Soybean	cytosol	60.96	61.34
KRH09287	Soybean	cytosol, nucleus, plasma membrane	61.34	61.18
TraesCS2D01G519000.2	Wheat	plasma membrane	54.28	52.69
TraesCS5D01G456000.1	Wheat	plasma membrane	52.39	52.53
TraesCS6D01G084300.1	Wheat	cytosol, nucleus, plasma membrane	48.24	48.67
TraesCS6D01G084000.2	Wheat	plasma membrane	47.98	48.6
TraesCS4D01G033500.1	Wheat	plasma membrane	43.45	42.96

Protein Annotations

Gene3D:1.10.3080.10	MapMan:24.2.16	Gene3D:3.10.580.10	InterPro:CBS_dom	InterPro:Cl-channel_core	InterPro:Cl-channel_volt-gated
InterPro:Cl_channel_pln	GO:GO:0003674	GO:GO:0005215	GO:GO:0005247	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005773	GO:GO:0005774	GO:GO:0006810	GO:GO:0006821
GO:GO:0008150	GO:GO:0009705	GO:GO:0016020	GO:GO:0055085	InterPro:IPR000644	InterPro:IPR014743
PFAM:PF00571	PFAM:PF00654	PRINTS:PR00762	PRINTS:PR01120	PFscan:PS51371	PANTHER:PTHR11689
PANTHER:PTHR11689:SF84	SMART:SM00116	SUPFAM:SSF54631	SUPFAM:SSF81340	TMHMM:TMhelix	EnsemblPlantsGene:TraesCS3D01G379600
EnsemblPlants:TraesCS3D01G379600.1	TIGR:cd03685	TIGR:cd04591	SEG:seg	:	:

Description

No Description!

Coordinates

chr3D:+:496504183..496507317

Molecular Weight (calculated)

85680.1 Da

IEP (calculated)

8.578

GRAVY (calculated)

0.365

Length

794 amino acids

Sequence
(BLAST)

001: MAMAKREKGL AVRPVPAPVP EAPTPSATPV SATAPTSARS VKWGDLEDAA GGLERPLLRQ RGSNTTSQMA VVGTNVCPIE SLDYEIVEND VYKQDWRSRG
101: RIQIFQYQVL KWLMALLVGS FVGLVGFFNN IAVENIAGYK LLLTSNLMRQ NRNLEAFLLY MACNAVLAGS AAAVCAYLAP AAAGSGIPEV KAYLNGVDAH
201: SILAPSTLFV KIIGSILGVS AGFMLGKEGP MVHTGACIAA MLGQGGSRRY GLTWNWIRYF KNDLDRRDLI TCGAAAGVTA AFRAPVGGVL FALEEATTWW
301: RSALLWRTFS TTAVSAIVLR SLIEYCRSGN CGLFGKGGLI MFDVSSRVTT YTATDIAAVI LLGILGGLLG ALFNHFVDRI LRRYGVINEK GAPYKILMTV
401: FISLVTSCCS FGLSSLSPCV PCPPELAPGK CPTIGRNGNY KKFWCPAGHY NALASLFFNT NDDAIRNLFS GGTDSEFGVY TLLTFFIGVY TLGLITYGVA
501: VPSGLFIPVI LSGASFGRLV GKVFGSGLDT GLFAIVGAAS FLGGTMRMTV SVCVILLELT NDLLLLPLIM LVLLVSKTVA DCFNKGVYEQ IVRMKGLPFL
601: EVHADACMRS LVASDVLSGP VITFSSVERV GSVVNTLRRT GHNGFPVIEE EPFAPAPELC GLVLRSHLIV LLNGRTFTRA PVKTGAAEVF RKLNPFDFAK
701: VGSSGKAMEV DELRLTEEEM DMYVDLHPIT NRSPYTVVEN MSLAKAAVLF RDLGLRHMCV VPRTPGRPPV LGILTRHDFM PEYIRGLFEN VLRE

Best Arabidopsis Sequence Match ( AT3G27170.1 )
(BLAST)

001: MVEEDLNQIG GNSNYNGEGG DPESNTLNQP LVKANRTLSS TPLALVGAKV SHIESLDYEI NENDLFKHDW RKRSKAQVLQ YVFLKWTLAC LVGLFTGLIA
101: TLINLAVENI AGYKLLAVGH FLTQERYVTG LMVLVGANLG LTLVASVLCV CFAPTAAGPG IPEIKAYLNG VDTPNMFGAT TMIVKIVGSI GAVAAGLDLG
201: KEGPLVHIGS CIASLLGQGG TDNHRIKWRW LRYFNNDRDR RDLITCGSAA GVCAAFRSPV GGVLFALEEV ATWWRSALLW RTFFSTAVVV VVLREFIEIC
301: NSGKCGLFGK GGLIMFDVSH VTYTYHVTDI IPVMLIGVIG GILGSLYNHL LHKVLRLYNL INEKGKIHKV LLSLTVSLFT SVCLYGLPFL AKCKPCDPSI
401: DEICPTNGRS GNFKQFHCPK GYYNDLATLL LTTNDDAVRN LFSSNTPNEF GMGSLWIFFV LYCILGLFTF GIATPSGLFL PIILMGAAYG RMLGAAMGSY
501: TSIDQGLYAV LGAAALMAGS MRMTVSLCVI FLELTNNLLL LPITMIVLLI AKTVGDSFNP SIYDIILHLK GLPFLEANPE PWMRNLTVGE LGDAKPPVVT
601: LQGVEKVSNI VDVLKNTTHN AFPVLDEAEV PQVGLATGAT ELHGLILRAH LVKVLKKRWF LTEKRRTEEW EVREKFPWDE LAEREDNFDD VAITSAEMEM
701: YVDLHPLTNT TPYTVMENMS VAKALVLFRQ VGLRHLLIVP KIQASGMCPV VGILTRQDLR AYNILQAFPL LEKSKGGKTH

Arabidopsis Description

CLC-BChloride channel protein [Source:UniProtKB/TrEMBL;Acc:A0A178VKG6]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.