Factsheet for VIT_07s0130g00400.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
plasma membrane 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plasma membrane
BaCelLo:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	plasma membrane
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_12s0035g01720.t01	Wine grape	plasma membrane	76.92	77.22
KRH38787	Soybean	cytosol	77.18	76.3
KRH09287	Soybean	cytosol, nucleus, plasma membrane	77.31	75.75
Zm00001d042651_P001	Maize	plasma membrane	68.21	67.0
EES01847	Sorghum	cytosol, peroxisome, plasma membrane	68.08	66.79
HORVU3Hr1G081920.1	Barley	plasma membrane, plastid	65.9	65.06
TraesCS3B01G418700.1	Wheat	mitochondrion	66.03	64.78
TraesCS3D01G379600.1	Wheat	plasma membrane, plastid	65.9	64.74
TraesCS3A01G390100.1	Wheat	plasma membrane, plastid	65.38	64.15
VIT_11s0118g00220.t01	Wine grape	plasma membrane	61.15	61.79
Os01t0876100-00	Rice	plasma membrane	67.44	60.32
VIT_14s0068g02190.t01	Wine grape	plasma membrane	54.49	53.87
VIT_05s0020g03090.t01	Wine grape	plasma membrane	45.77	44.62
VIT_14s0068g02330.t01	Wine grape	cytosol, extracellular	3.85	36.59
VIT_00s0316g00020.t01	Wine grape	cytosol	3.85	35.71

Protein Annotations

EntrezGene:100259734	wikigene:100259734	MapMan:24.2.16	Gene3D:3.10.580.10	ProteinID:ADK66981	ProteinID:ADK66981.1
InterPro:CBS_dom	ProteinID:CCB51350	ProteinID:CCB51350.1	InterPro:Cl-channel_core	InterPro:Cl-channel_volt-gated	InterPro:Cl_channel_pln
UniProt:E2GMA3	EMBL:FN595755	GO:GO:0003674	GO:GO:0005215	GO:GO:0005216	GO:GO:0005247
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005773	GO:GO:0006810
GO:GO:0006811	GO:GO:0006821	GO:GO:0008150	GO:GO:0009705	GO:GO:0016020	GO:GO:0016021
GO:GO:0055085	GO:GO:1902476	EMBL:HM369801	InterPro:IPR000644	InterPro:IPR014743	EntrezGene:LOC100259734
wikigene:LOC100259734	RefSeq:NP_001268085.1	PFAM:PF00571	PFAM:PF00654	PRINTS:PR00762	PRINTS:PR01120
PFscan:PS51371	PANTHER:PTHR11689	PANTHER:PTHR11689:SF107	SUPFAM:SSF54631	SUPFAM:SSF81340	TIGR:TC65509
TIGR:TC70040	TMHMM:TMhelix	UniParc:UPI00019859EE	ArrayExpress:VIT_07s0130g00400	EnsemblPlantsGene:VIT_07s0130g00400	EnsemblPlants:VIT_07s0130g00400.t01
unigene:Vvi.12260	RefSeq:XP_010653021.1	RefSeq:XP_010653022.1	RefSeq:XP_010653023.1	RefSeq:XP_010653024.1	RefSeq:XP_010653026.1
RefSeq:XP_010653027.1	RefSeq:XP_019076387.1	RefSeq:XP_019076388.1	RefSeq:XP_019076389.1	SEG:seg	:

Description

Chloride channel ClC3 [Source:UniProtKB/TrEMBL;Acc:E2GMA3]

Coordinates

chr7:-:20707638..20716165

Molecular Weight (calculated)

84957.1 Da

IEP (calculated)

7.926

GRAVY (calculated)

0.373

Length

780 amino acids

Sequence
(BLAST)

001: MDGEGSSNHI GGMNDLENEG FLDGKEIERY WSEISEKSMI MYKEPLLTKR MNTTSQIAIV GANVCSIESL DYEIVENELF KQDWRSRKKA QIFQYVVLKW
101: ALALLIGLGT GLVGFFNNIA VENIAGFKLL LTSDFMSQKK YFKAFAAYAS CNIGLAAAAA ALCAFIAPAA AGSGIPEVKA YLNGIDAHSI LAPSTLFVKI
201: FGSILGVSAG FVVGKEGPMV HTGACIASLL GQGGSRKYHL TWSWLKYFKN DQDRRDLITC GAAAGVAAAF RAPVGGVLFA LEEAASWWRS ALLWRTFFTT
301: AVVAIVLRAF IEYCWTGKCG LFGQGGLIMY DVSAATETYG VPDILAVLFL GVIGGIFGSL YNYLVDKVLR TYSIINEKGA RSKILLVVTI CILTTCCSFG
401: LPWFSKCIAC PADLAVTCST ESGNFKRFQC QSGYYNDLAS LFLNTNDDAI RNLFSTSTRH EFRISSLFIF FAAIYCLGII TYGIAVPSGL FIPVILAGAC
501: YGRLVGRLFA SISKLDTGLF ALLGAASFLG GTMRMTVSLC VILLELTNDL LLLPLVMLVL LVSKTVADSF NKGVYDQIVK LKGLPYMEAH AEPYMKHLAA
601: RDVVSGPLVT FSGIEKVGNI MHALRTTGHN GFPVIDEPPF TDAPELCGLV LRSHLLVLLK GKSFSRNQVH CGGEILRKYA ALDFAKAGSG KGVKLEDLNI
701: EEEEMEMYVD LHPITNASPY TVVETMSLAK AAILFRQVGL RHMCVVPKSQ GRPPIVGILT RHDFMPEHIL GLYPHLSPHK

Best Arabidopsis Sequence Match ( AT5G49890.1 )
(BLAST)

001: MDDRHEGDHH DIEVEGGALH GFERKISGIL DDGSVGFRQP LLARNRKNTT SQIAIVGANT CPIESLDYEI FENDFFKQDW RSRKKIEILQ YTFLKWALAF
101: LIGLATGLVG FLNNLGVENI AGFKLLLIGN LMLKEKYFQA FFAFAGCNLI LATAAASLCA FIAPAAAGSG IPEVKAYLNG IDAYSILAPS TLFVKIFGSI
201: FGVAAGFVVG KEGPMVHTGA CIANLLGQGG SKKYRLTWKW LRFFKNDRDR RDLITCGAAA GVAAAFRAPV GGVLFALEEA ASWWRNALLW RTFFTTAVVA
301: VVLRSLIEFC RSGRCGLFGK GGLIMFDVNS GPVLYSTPDL LAIVFLGVIG GVLGSLYNYL VDKVLRTYSI INEKGPRFKI MLVMAVSILS SCCAFGLPWL
401: SQCTPCPIGI EEGKCPSVGR SSIYKSFQCP PNHYNDLSSL LLNTNDDAIR NLFTSRSENE FHISTLAIFF VAVYCLGIIT YGIAIPSGLF IPVILAGASY
501: GRLVGRLLGP VSQLDVGLFS LLGAASFLGG TMRMTVSLCV ILLELTNNLL MLPLVMLVLL ISKTVADCFN RGVYDQIVTM KGLPYMEDHA EPYMRNLVAK
601: DVVSGALISF SRVEKVGVIW QALKMTRHNG FPVIDEPPFT EASELCGIAL RSHLLVLLQG KKFSKQRTTF GSQILRSCKA RDFGKAGLGK GLKIEDLDLS
701: EEEMEMYVDL HPITNTSPYT VLETLSLAKA AILFRQLGLR HLCVVPKTPG RPPIVGILTR HDFMPEHVLG LYPHIDPLK

Arabidopsis Description

CLC-CChloride channel protein CLC-c [Source:UniProtKB/Swiss-Prot;Acc:Q96282]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.