CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, nucleus, cytosol

Predictor Summary:

cytosol 2
plasma membrane 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH38787	Soybean	cytosol	94.72	95.56
VIT_07s0130g00400.t01	Wine grape	cytosol	75.75	77.31
Zm00001d042651_P001	Maize	plasma membrane	63.82	63.98
EES01847	Sorghum	cytosol, peroxisome, plasma membrane	63.69	63.77
TraesCS3D01G379600.1	Wheat	plasma membrane, plastid	61.18	61.34
HORVU3Hr1G081920.1	Barley	plasma membrane, plastid	60.8	61.27
TraesCS3B01G418700.1	Wheat	mitochondrion	61.18	61.26
TraesCS3A01G390100.1	Wheat	plasma membrane, plastid	60.55	60.63
KRH20183	Soybean	plasma membrane	55.65	57.91
Os01t0876100-00	Rice	plasma membrane	62.69	57.22
KRH57669	Soybean	plasma membrane	49.25	50.45
KRG94508	Soybean	plasma membrane	49.75	50.13
KRH06955	Soybean	plasma membrane	46.73	49.93
KRH27622	Soybean	plasma membrane	43.47	43.2
KRH77868	Soybean	plasma membrane	43.47	43.2

Protein Annotations

Gene3D:1.10.3080.10	EntrezGene:100809070	MapMan:24.2.16	Gene3D:3.10.580.10	EMBL:ACUP02010275	InterPro:CBS_dom
InterPro:Cl-channel_core	InterPro:Cl-channel_volt-gated	InterPro:Cl_channel_pln	EnsemblPlantsGene:GLYMA_16G208400	GO:GO:0003674	GO:GO:0005215
GO:GO:0005216	GO:GO:0005247	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005773	GO:GO:0006810	GO:GO:0006811	GO:GO:0006821	GO:GO:0008150	GO:GO:0009705
GO:GO:0016020	GO:GO:0016021	GO:GO:0055085	GO:GO:1902476	InterPro:IPR000644	InterPro:IPR014743
UniProt:K7MIS3	ProteinID:KRH09284.1	ProteinID:KRH09285.1	ProteinID:KRH09286.1	EnsemblPlants:KRH09287	ProteinID:KRH09287
ProteinID:KRH09287.1	ProteinID:KRH09288.1	ProteinID:KRH09289.1	ProteinID:KRH09290.1	ProteinID:KRH09291.1	ProteinID:KRH09292.1
ProteinID:KRH09293.1	PFAM:PF00571	PFAM:PF00654	PRINTS:PR00762	PRINTS:PR01120	PFscan:PS51371
PANTHER:PTHR11689	PANTHER:PTHR11689:SF107	SMART:SM00116	SUPFAM:SSF54631	SUPFAM:SSF81340	TMHMM:TMhelix
UniParc:UPI0002954132	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr16:-:36789890..36801967

Molecular Weight (calculated)

87003.2 Da

IEP (calculated)

6.899

GRAVY (calculated)

0.325

Length

796 amino acids

Sequence
(BLAST)

001: MTPTSGEGAE KMDAEDGVNC SDYEHDIENE DLWDGNEESG GYWSGIYDRN KAHTKPLLMK GTNTTSQIAI IGANLCPIES LDYEIFDNEI LKNDWSSRKK
101: VQIIHYVMLK WGFALLIGLG TGLVGFFNSF AVENIAGFKL FMTTSLMSKH RYLEAFLAYA GANMCLAAAA AALCAFIAPA AAGSGIPEVK AYLNGVDAQH
201: ILAPSTLFVK IFGSILGVSA GFVVGKEGPM VHTGACIASL LGQGGSRKYH LTCTWLRYFK NDRDRRDMIT CGAAAGVAAA FRAPVGGVLF ALEEAATWWR
301: SALLWRTFFT TAVVAIVLRV AIQFCATGGK CGLFGEGGLI MYDVSSANIT YSASGIFAVL LMGAIAGILG SIYNYLVDKV VRTYSIINGK GAFSKISLVV
401: TIALLTSCCY YFLPWIAYCI PCPSNSTVIC PSVDESGEYK NFQCPPGYYN DLASLFLNTN DDAIRNLFSP RIIKEFHITS LFIYFATIYC LGIITYGIAI
501: PSGLFIPVIL AGAAYGRLFG RLFETITKLD RGLFALLGAA SFLGGTMRMT VSICVILLEL TNDLLLLPLV MLVLLVSKTV ADSFNKGVYD QILKIKGLPY
601: LEAHAEPYMR NLVTRDVVSG PLITFSGIEK VRNILHALHT TGHNGFPVID EPPFSDAPEL CGLVLRSHLL VLLKEKIFSR DRGFANPVIF QRISTLDFGK
701: AGSGKEIKLE DLDIQEEEID MYVDLHPITN ASPYTVVETM SLAKAAILFR QHGLRHMCVV PKSQGRPPVV GILTRHDFMP EHVLGLYPDI KPHKWQ

Best Arabidopsis Sequence Match ( AT5G49890.1 )
(BLAST)

001: MDDRHEGDHH DIEVEGGALH GFERKISGIL DDGSVGFRQP LLARNRKNTT SQIAIVGANT CPIESLDYEI FENDFFKQDW RSRKKIEILQ YTFLKWALAF
101: LIGLATGLVG FLNNLGVENI AGFKLLLIGN LMLKEKYFQA FFAFAGCNLI LATAAASLCA FIAPAAAGSG IPEVKAYLNG IDAYSILAPS TLFVKIFGSI
201: FGVAAGFVVG KEGPMVHTGA CIANLLGQGG SKKYRLTWKW LRFFKNDRDR RDLITCGAAA GVAAAFRAPV GGVLFALEEA ASWWRNALLW RTFFTTAVVA
301: VVLRSLIEFC RSGRCGLFGK GGLIMFDVNS GPVLYSTPDL LAIVFLGVIG GVLGSLYNYL VDKVLRTYSI INEKGPRFKI MLVMAVSILS SCCAFGLPWL
401: SQCTPCPIGI EEGKCPSVGR SSIYKSFQCP PNHYNDLSSL LLNTNDDAIR NLFTSRSENE FHISTLAIFF VAVYCLGIIT YGIAIPSGLF IPVILAGASY
501: GRLVGRLLGP VSQLDVGLFS LLGAASFLGG TMRMTVSLCV ILLELTNNLL MLPLVMLVLL ISKTVADCFN RGVYDQIVTM KGLPYMEDHA EPYMRNLVAK
601: DVVSGALISF SRVEKVGVIW QALKMTRHNG FPVIDEPPFT EASELCGIAL RSHLLVLLQG KKFSKQRTTF GSQILRSCKA RDFGKAGLGK GLKIEDLDLS
701: EEEMEMYVDL HPITNTSPYT VLETLSLAKA AILFRQLGLR HLCVVPKTPG RPPIVGILTR HDFMPEHVLG LYPHIDPLK

Arabidopsis Description

CLC-CChloride channel protein CLC-c [Source:UniProtKB/Swiss-Prot;Acc:Q96282]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.