Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- plasma membrane 5
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_01s0010g03800.t01 | |
| VIT_09s0002g03770.t01 | |
| VIT_10s0003g01830.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G40890.1 | VIT_01s0010g03800.t01 | AT1G27300.1 | 21798944 |
| AT5G40890.1 | VIT_09s0002g03770.t01 | AT3G16310.1 | 21798944 |
| AT5G40890.1 | VIT_10s0003g01830.t01 | AT4G19030.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_14s0068g02330.t01 | Wine grape | cytosol, extracellular | 8.62 | 82.93 |
| Solyc02g068080.2.1 | Tomato | peroxisome, plasma membrane, vacuole | 82.38 | 82.91 |
| KRG94508 | Soybean | plasma membrane | 82.89 | 82.78 |
| PGSC0003DMT400017962 | Potato | peroxisome, plasma membrane, vacuole | 82.13 | 82.65 |
| KRH57669 | Soybean | plasma membrane | 80.48 | 81.72 |
| KRH06955 | Soybean | plasma membrane | 76.81 | 81.34 |
| Bra028478.1-P | Field mustard | plasma membrane | 79.21 | 81.17 |
| CDX67478 | Canola | plasma membrane | 79.09 | 81.04 |
| CDY11722 | Canola | plasma membrane | 79.09 | 81.04 |
| VIT_00s0316g00020.t01 | Wine grape | cytosol | 8.62 | 80.95 |
| AT3G27170.1 | Thale cress | plasma membrane | 79.97 | 80.9 |
| Bra030328.1-P | Field mustard | plasma membrane | 79.34 | 80.67 |
| CDY15925 | Canola | plasma membrane | 79.21 | 80.54 |
| AT5G40890.1 | Thale cress | plasma membrane | 78.83 | 80.26 |
| CDX83663 | Canola | plasma membrane | 79.59 | 80.2 |
| CDX99630 | Canola | plasma membrane | 78.83 | 80.15 |
| Bra025253.1-P | Field mustard | plasma membrane | 79.47 | 80.08 |
| CDY13685 | Canola | plasma membrane | 79.34 | 79.95 |
| CDY34173 | Canola | plasma membrane | 78.96 | 79.87 |
| Bra032985.1-P | Field mustard | plasma membrane | 78.96 | 79.57 |
| CDY28488 | Canola | plasma membrane | 78.71 | 79.31 |
| PGSC0003DMT400052072 | Potato | plasma membrane | 74.78 | 76.23 |
| Solyc02g094060.2.1 | Tomato | plasma membrane | 73.38 | 75.88 |
| GSMUA_Achr3P16100_001 | Banana | plasma membrane | 69.71 | 75.86 |
| TraesCS6B01G126400.1 | Wheat | plasma membrane | 69.45 | 69.63 |
| TraesCS6D01G084300.1 | Wheat | cytosol, nucleus, plasma membrane | 69.33 | 69.5 |
| EER90148 | Sorghum | plasma membrane | 69.84 | 68.79 |
| TraesCS6A01G098600.1 | Wheat | plasma membrane | 67.81 | 68.77 |
| Zm00001d046919_P001 | Maize | plasma membrane | 69.71 | 68.66 |
| TraesCS6B01G126800.1 | Wheat | plasma membrane | 68.06 | 68.49 |
| TraesCS6D01G084000.2 | Wheat | plasma membrane | 67.93 | 68.37 |
| TraesCS6A01G098500.2 | Wheat | cytosol, peroxisome, plasma membrane | 67.43 | 66.83 |
| HORVU0Hr1G015220.3 | Barley | cytosol | 30.42 | 58.39 |
| Os12t0438600-01 | Rice | plasma membrane | 10.9 | 56.58 |
| VIT_11s0118g00220.t01 | Wine grape | plasma membrane | 53.36 | 54.53 |
| VIT_07s0130g00400.t01 | Wine grape | cytosol | 53.87 | 54.49 |
| VIT_12s0035g01720.t01 | Wine grape | plasma membrane | 53.49 | 54.31 |
| VIT_05s0020g03090.t01 | Wine grape | plasma membrane | 43.22 | 42.62 |
Protein Annotations
| EntrezGene:100260066 | wikigene:100260066 | MapMan:24.2.16 | Gene3D:3.10.580.10 | ProteinID:ADK66982 | ProteinID:ADK66982.1 |
| ProteinID:CBI21361 | ProteinID:CBI21361.3 | InterPro:CBS_dom | InterPro:Cl-channel_core | InterPro:Cl-channel_volt-gated | InterPro:Cl_channel_pln |
| UniProt:D7SVR2 | EMBL:FN595232 | GO:GO:0003674 | GO:GO:0005215 | GO:GO:0005216 | GO:GO:0005247 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005773 | GO:GO:0006810 |
| GO:GO:0006811 | GO:GO:0006821 | GO:GO:0008150 | GO:GO:0009671 | GO:GO:0009705 | GO:GO:0015706 |
| GO:GO:0016020 | GO:GO:0016021 | GO:GO:0034220 | GO:GO:0055085 | GO:GO:1902476 | GO:GO:1902600 |
| EMBL:HM369802 | InterPro:IPR000644 | InterPro:IPR014743 | EntrezGene:LOC100260066 | wikigene:LOC100260066 | PFAM:PF00571 |
| PFAM:PF00654 | PRINTS:PR00762 | PRINTS:PR01120 | PFscan:PS51371 | PANTHER:PTHR11689 | PANTHER:PTHR11689:SF67 |
| SMART:SM00116 | SUPFAM:SSF54631 | SUPFAM:SSF81340 | TMHMM:TMhelix | UniParc:UPI0001BE1869 | ArrayExpress:VIT_14s0068g02190 |
| EnsemblPlantsGene:VIT_14s0068g02190 | EnsemblPlants:VIT_14s0068g02190.t01 | unigene:Vvi.22645 | RefSeq:XP_010660593.1 | RefSeq:XP_010660594.1 | SEG:seg |
Description
No Description!
Coordinates
chr14:+:25779520..25783996
Molecular Weight (calculated)
86694.1 Da
IEP (calculated)
7.640
GRAVY (calculated)
0.303
Length
789 amino acids
Sequence
(BLAST)
(BLAST)
001: MEEDPSQVAE TTTTTTSSVE GVGEGEERDL ESNPLNQPLL KRSRTLSSNP LAIVGAKVSH IESLDYEINE NDLFKHDWRS RSSAQVLQYI FLKWSLAFLV
101: GLLTGLIATL INLAVENIAG YKLLAVSGLV EKKRYLTGFI YLTTANFVLT LFAAFLCVCF APTAAGPGIP EIKAYLNGVD TPNMFGASTL IVKIFGSIGA
201: VSAGLDLGKE GPLVHIGSCI ASLLGQGGPE NYRIKWRWLR YFNNDRDRRD LITCGASSGV CAAFRAPVGG VLFSLEEVAT WWRSALLWRT FFSTAVVAVV
301: LRAFIEYCNS GKCGLFGRGG LIMFDVSDVT VTYHAMDIAP VALIGLIGGV LGSLYNHLLH KVLRVYNLIN QKGKIHKLLL SLSVSLFTSI CLYCLPFLAT
401: CSPCDSSITE TCPTNGRTGN FKQFNCPDGY YNDLASLLFT TNDDAVRNIF STNTATEFHP LSLLIFFGLY YILGLITFGI AVPSGLFLPI ILMGSAYGRL
501: LGIAMGSYTK IDQGLYAVLG AASLMAGSMR MTVSLCVIFL ELTNNLLLLP ITMIVLLIAK SVGDCINPSI YDIILHLKGL PFLDANPEPW MRNLTVGELA
601: DAKPPVVTLR GVEKVARIVD VLRNTTHNGF PVVDEGVVPR VGLAIGATEL HGIVLRAHLV KVLKKKWFLQ ERRRTEEWEV REKFTWIELA EREGKFEEVA
701: VTNDEMEMYV DLHPLTNTTP YTVVESMSVA KAMVLFRQVG LRHMLIVPKY QAAGVSPVVG ILTRQDLRAY NILTAFPHLA KSKEREKGN
101: GLLTGLIATL INLAVENIAG YKLLAVSGLV EKKRYLTGFI YLTTANFVLT LFAAFLCVCF APTAAGPGIP EIKAYLNGVD TPNMFGASTL IVKIFGSIGA
201: VSAGLDLGKE GPLVHIGSCI ASLLGQGGPE NYRIKWRWLR YFNNDRDRRD LITCGASSGV CAAFRAPVGG VLFSLEEVAT WWRSALLWRT FFSTAVVAVV
301: LRAFIEYCNS GKCGLFGRGG LIMFDVSDVT VTYHAMDIAP VALIGLIGGV LGSLYNHLLH KVLRVYNLIN QKGKIHKLLL SLSVSLFTSI CLYCLPFLAT
401: CSPCDSSITE TCPTNGRTGN FKQFNCPDGY YNDLASLLFT TNDDAVRNIF STNTATEFHP LSLLIFFGLY YILGLITFGI AVPSGLFLPI ILMGSAYGRL
501: LGIAMGSYTK IDQGLYAVLG AASLMAGSMR MTVSLCVIFL ELTNNLLLLP ITMIVLLIAK SVGDCINPSI YDIILHLKGL PFLDANPEPW MRNLTVGELA
601: DAKPPVVTLR GVEKVARIVD VLRNTTHNGF PVVDEGVVPR VGLAIGATEL HGIVLRAHLV KVLKKKWFLQ ERRRTEEWEV REKFTWIELA EREGKFEEVA
701: VTNDEMEMYV DLHPLTNTTP YTVVESMSVA KAMVLFRQVG LRHMLIVPKY QAAGVSPVVG ILTRQDLRAY NILTAFPHLA KSKEREKGN
001: MVEEDLNQIG GNSNYNGEGG DPESNTLNQP LVKANRTLSS TPLALVGAKV SHIESLDYEI NENDLFKHDW RKRSKAQVLQ YVFLKWTLAC LVGLFTGLIA
101: TLINLAVENI AGYKLLAVGH FLTQERYVTG LMVLVGANLG LTLVASVLCV CFAPTAAGPG IPEIKAYLNG VDTPNMFGAT TMIVKIVGSI GAVAAGLDLG
201: KEGPLVHIGS CIASLLGQGG TDNHRIKWRW LRYFNNDRDR RDLITCGSAA GVCAAFRSPV GGVLFALEEV ATWWRSALLW RTFFSTAVVV VVLREFIEIC
301: NSGKCGLFGK GGLIMFDVSH VTYTYHVTDI IPVMLIGVIG GILGSLYNHL LHKVLRLYNL INEKGKIHKV LLSLTVSLFT SVCLYGLPFL AKCKPCDPSI
401: DEICPTNGRS GNFKQFHCPK GYYNDLATLL LTTNDDAVRN LFSSNTPNEF GMGSLWIFFV LYCILGLFTF GIATPSGLFL PIILMGAAYG RMLGAAMGSY
501: TSIDQGLYAV LGAAALMAGS MRMTVSLCVI FLELTNNLLL LPITMIVLLI AKTVGDSFNP SIYDIILHLK GLPFLEANPE PWMRNLTVGE LGDAKPPVVT
601: LQGVEKVSNI VDVLKNTTHN AFPVLDEAEV PQVGLATGAT ELHGLILRAH LVKVLKKRWF LTEKRRTEEW EVREKFPWDE LAEREDNFDD VAITSAEMEM
701: YVDLHPLTNT TPYTVMENMS VAKALVLFRQ VGLRHLLIVP KIQASGMCPV VGILTRQDLR AYNILQAFPL LEKSKGGKTH
101: TLINLAVENI AGYKLLAVGH FLTQERYVTG LMVLVGANLG LTLVASVLCV CFAPTAAGPG IPEIKAYLNG VDTPNMFGAT TMIVKIVGSI GAVAAGLDLG
201: KEGPLVHIGS CIASLLGQGG TDNHRIKWRW LRYFNNDRDR RDLITCGSAA GVCAAFRSPV GGVLFALEEV ATWWRSALLW RTFFSTAVVV VVLREFIEIC
301: NSGKCGLFGK GGLIMFDVSH VTYTYHVTDI IPVMLIGVIG GILGSLYNHL LHKVLRLYNL INEKGKIHKV LLSLTVSLFT SVCLYGLPFL AKCKPCDPSI
401: DEICPTNGRS GNFKQFHCPK GYYNDLATLL LTTNDDAVRN LFSSNTPNEF GMGSLWIFFV LYCILGLFTF GIATPSGLFL PIILMGAAYG RMLGAAMGSY
501: TSIDQGLYAV LGAAALMAGS MRMTVSLCVI FLELTNNLLL LPITMIVLLI AKTVGDSFNP SIYDIILHLK GLPFLEANPE PWMRNLTVGE LGDAKPPVVT
601: LQGVEKVSNI VDVLKNTTHN AFPVLDEAEV PQVGLATGAT ELHGLILRAH LVKVLKKRWF LTEKRRTEEW EVREKFPWDE LAEREDNFDD VAITSAEMEM
701: YVDLHPLTNT TPYTVMENMS VAKALVLFRQ VGLRHLLIVP KIQASGMCPV VGILTRQDLR AYNILQAFPL LEKSKGGKTH
Arabidopsis Description
CLC-BChloride channel protein [Source:UniProtKB/TrEMBL;Acc:A0A178VKG6]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.